charite.christo.protein
Class StupidParser

java.lang.Object
  charite.christo.protein.StupidParser

All Implemented Interfaces:

ProteinParser

public class StupidParser
extends java.lang.Object
implements ProteinParser

HELP This parser is indeed stupid. It takes all letters as amino acids.

Field Summary

Fields inherited from interface charite.christo.protein.ProteinParser

IGNORE_SEQRES, SEQUENCE_FEATURES, SIDE_CHAIN_ATOMS

Constructor Summary

StupidParser()

Method Summary

boolean

parse(Protein p, long options, BA byteArray)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

StupidParser

public StupidParser()

Method Detail

parse

public boolean parse(Protein p,
                     long options,
                     BA byteArray)

Specified by:

parse in interface ProteinParser

byteArray - the entire file contents It is a byte array and not a String Object for performance reasons.

Returns:

true: success, false: inappropriate file format