charite.christo.protein
Class XML_SequenceParser

java.lang.Object
  charite.christo.protein.XML_SequenceParser

All Implemented Interfaces:

ProteinParser

public class XML_SequenceParser
extends java.lang.Object
implements ProteinParser

HELP PSDKLERLYQR...NGGPPLS

Field Summary

Fields inherited from interface charite.christo.protein.ProteinParser

IGNORE_SEQRES, SEQUENCE_FEATURES, SIDE_CHAIN_ATOMS

Constructor Summary

XML_SequenceParser()

Method Summary

boolean

parse(Protein p, long options, BA ba)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

XML_SequenceParser

public XML_SequenceParser()

Method Detail

parse

public boolean parse(Protein p,
                     long options,
                     BA ba)

Specified by:

parse in interface ProteinParser

ba - the entire file contents It is a byte array and not a String Object for performance reasons.

Returns:

true: success, false: inappropriate file format