charite.christo.strap
Class AbstractAlignerProxy

java.lang.Object
  charite.christo.AbstractProxy
      charite.christo.strap.AbstractAlignerProxy

All Implemented Interfaces:

HasPropertyMap

Direct Known Subclasses:

PairAlignerJAlignerPROXY, PairAlignerNeoBioPROXY, Superimpose_CEPROXY, Superimpose_GoedePROXY, Superimpose_LajollaProteinPROXY

public abstract class AbstractAlignerProxy
extends AbstractProxy

Field Summary

Fields inherited from class charite.christo.AbstractProxy

ACTIVATION, ADAPTERS_JAR, BIOJAVA_3D, COMMONS_COLLECTIONS, GLUGEN, JCOMMON, JOGL, LOG4J, PFX_INSTALLED, TRY_BOOT_CLASSLOADER

Constructor Summary

AbstractAlignerProxy()

Method Summary

void	compute()
byte[][]	getAlignedSequences()
long	getOptions()
Protein[]	getProteins()
Superimpose3D.Result	getResult()
byte[][]	getSequences()
void	setOptions(long flags)
void	setProteins(Protein... pp)
void	setSequences(byte[]... ss)

Methods inherited from class charite.christo.AbstractProxy

dispose, disposeProxy, getControlPanel, getPrgParas, getPropertyMap, getProxy, getRequiredJars, getScore, getSharedControlPanel, getSharedInstance, interpret, jarFile, jarsContainingNativeLibraries, proxyObject, proxyObjectRun, remoteURLs, setOptions, setSharedInstance, usrShareJava

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AbstractAlignerProxy

public AbstractAlignerProxy()

Method Detail

setOptions

public void setOptions(long flags)

getOptions

public long getOptions()

setSequences

public void setSequences(byte[]... ss)

getAlignedSequences

public byte[][] getAlignedSequences()

getSequences

public byte[][] getSequences()

setProteins

public void setProteins(Protein... pp)

getProteins

public Protein[] getProteins()

compute

public void compute()

getResult

public Superimpose3D.Result getResult()