charite.christo.strap.extensions
Class Superimpose_LajollaProteinPROXY

java.lang.Object
  charite.christo.AbstractProxy
      charite.christo.strap.AbstractAlignerProxy
          charite.christo.strap.extensions.Superimpose_LajollaProteinPROXY

All Implemented Interfaces:

HasPropertyMap, NeedsProteins, Superimpose3D

Direct Known Subclasses:

Superimpose_LajollaRNA

public class Superimpose_LajollaProteinPROXY
extends AbstractAlignerProxy
implements Superimpose3D

HELP Home: http://lajolla.sf.net

Written in Java by Raphael Bauer

Nested Class Summary

Nested classes/interfaces inherited from interface charite.christo.protein.Superimpose3D

Superimpose3D.Result

Field Summary

Fields inherited from class charite.christo.AbstractProxy

ACTIVATION, ADAPTERS_JAR, BIOJAVA_3D, COMMONS_COLLECTIONS, GLUGEN, JCOMMON, JOGL, LOG4J, PFX_INSTALLED, TRY_BOOT_CLASSLOADER

Fields inherited from interface charite.christo.protein.Superimpose3D

COLUMN_SEQUENCE, NO_BYTE, PARSE_ALIGNMENT, PARSE_MATRIX, PARSE_MSA_START_S, PARSE_SCORE, PRINT_HUMAN_READABLE

Constructor Summary

Superimpose_LajollaProteinPROXY()

Method Summary

java.lang.String

getRequiredJars()

Methods inherited from class charite.christo.strap.AbstractAlignerProxy

compute, getAlignedSequences, getOptions, getProteins, getResult, getSequences, setOptions, setProteins, setSequences

Methods inherited from class charite.christo.AbstractProxy

dispose, disposeProxy, getControlPanel, getPrgParas, getPropertyMap, getProxy, getScore, getSharedControlPanel, getSharedInstance, interpret, jarFile, jarsContainingNativeLibraries, proxyObject, proxyObjectRun, remoteURLs, setOptions, setSharedInstance, usrShareJava

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface charite.christo.protein.Superimpose3D

compute, getOptions, getProteins, getResult, setOptions

Methods inherited from interface charite.christo.protein.NeedsProteins

setProteins

Constructor Detail

Superimpose_LajollaProteinPROXY

public Superimpose_LajollaProteinPROXY()

Method Detail

getRequiredJars

public java.lang.String getRequiredJars()

Specified by:

getRequiredJars in class AbstractProxy