charite.christo.strap.extensions
Class CoiledCoil_PredictorRobinson

java.lang.Object
  charite.christo.strap.extensions.CoiledCoil_PredictorRobinson

All Implemented Interfaces:

CoiledCoil_Predictor, PredictionFromAminoacidSequence

public class CoiledCoil_PredictorRobinson
extends java.lang.Object
implements CoiledCoil_Predictor

Constructor Summary

CoiledCoil_PredictorRobinson()

Method Summary

void	compute() Computation is started and may take long time.
char[][]	getPrediction() Returns a character for each sequence position.
void	setGappedSequences(java.lang.String[] ss) set the sequences.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CoiledCoil_PredictorRobinson

public CoiledCoil_PredictorRobinson()

Method Detail

setGappedSequences

public void setGappedSequences(java.lang.String[] ss)

Description copied from interface: PredictionFromAminoacidSequence

set the sequences. Since some prediction methods take an alignment as input we pass several sequences that might be aligned. For example a secondary structure predictore might compute refine the prediction using multiple sequences

Specified by:

setGappedSequences in interface PredictionFromAminoacidSequence

compute

public void compute()

Description copied from interface: PredictionFromAminoacidSequence

Computation is started and may take long time.

Specified by:

compute in interface PredictionFromAminoacidSequence

getPrediction

public char[][] getPrediction()

Description copied from interface: PredictionFromAminoacidSequence

Returns a character for each sequence position. For example 'H' for Helix..

Specified by:

getPrediction in interface PredictionFromAminoacidSequence