charite.christo.strap.extensions
Class ResidueSolventAccessibility

java.lang.Object
  charite.christo.strap.extensions.ResidueSolventAccessibility

All Implemented Interfaces:

HasModiCount, IsEnabled, HasProtein, ValueOfResidue

public class ResidueSolventAccessibility
extends java.lang.Object
implements ValueOfResidue, IsEnabled, HasModiCount

HELP The solvent accessibility of a protein is currently loaded only from dssp-files.

Constructor Summary

ResidueSolventAccessibility()

Method Summary

Protein	getProtein()
double[]	getValues() Plugin that returns a numeric value for each amino acid of the protein or null.
boolean	isEnabled(java.lang.Object p)
int	modificationCount()
void	setProtein(Protein p)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ResidueSolventAccessibility

public ResidueSolventAccessibility()

Method Detail

modificationCount

public int modificationCount()

Specified by:

modificationCount in interface HasModiCount

setProtein

public void setProtein(Protein p)

Specified by:

setProtein in interface ValueOfResidue

getProtein

public Protein getProtein()

Specified by:

getProtein in interface HasProtein

getValues

public double[] getValues()

Description copied from interface: ValueOfResidue

Plugin that returns a numeric value for each amino acid of the protein or null. These are plotted in the alignment pane. It should notify changes by dispatching a JAVADOC:StrapEvent of type JAVADOC:StrapEvent#VALUE_OF_RESIDUE_CHANGED

Specified by:

getValues in interface ValueOfResidue

isEnabled

public boolean isEnabled(java.lang.Object p)

Specified by:

isEnabled in interface IsEnabled