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  • Assemble: a tool to construct and study RNA architectures - Support tickets

    Submit | Open tickets | Closed tickets

    [ Ticket #1086 ] can not refine
    Date:
    05/04/09 17:22
    Submitted by:
    jjwest
    Assigned to:
    unset
    Category:
    Unset
    Priority:
    5
    Ticket group:
    Unset
    Resolution:
    Unset
    Summary:
    can not refine
    Original submission:
    When I try to refine coordinates from pdbs, I get an error:


    Error


    Message:
    fr.unistra.ibmc.paradise.goloka.core.analysis.AnalysisException: java.lang.NullPointerException: null
    Level:
    SEVERE
    Stack Trace:
    java.lang.NullPointerException: null
    fr.unistra.ibmc.paradise.goloka.services.analysis.rnart.Nuclin.getFileFromBank(Nuclin.java:242)
    fr.unistra.ibmc.paradise.goloka.services.analysis.rnart.parsing.NuclinDc.parseNuclinDc(NuclinDc.java:90)
    fr.unistra.ibmc.paradise.goloka.services.analysis.rnart.parsing.NuclinDc.<init>(NuclinDc.java:28)
    fr.unistra.ibmc.paradise.goloka.services.analysis.rnart.Nuclin.<init>(Nuclin.java:124)
    fr.unistra.ibmc.paradise.goloka.services.analysis.rnart.NucMult.<init>(NucMult.java:69)
    fr.unistra.ibmc.paradise.goloka.services.analysis.rnart.RnartAnalysis.run(RnartAnalysis.java:148)
    fr.unistra.ibmc.paradise.goloka.services.analysis.RequestBehaviour$1AnalysisWorker.doInBackground(RequestBehaviour.java:81)
    org.jdesktop.swingworker.SwingWorker$1.call(Unknown Source)
    java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
    java.util.concurrent.FutureTask.run(FutureTask.java:138)
    org.jdesktop.swingworker.SwingWorker.run(Unknown Source)
    java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
    java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
    java.lang.Thread.run(Thread.java:619)


    Thanks for the help.
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    Followups
    Comment Date By
    This happens even after I "auto install" the dependent packages with the script. 05/05/09 11:35 jjwest
    No results for "Dependent on ticket"
    No results for "Dependent on Task"
    No other tickets are dependent on this ticket
    No changes have been made to this ticket

     

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