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  • BIRCH: Comprehensive bioinfo. system - Support tickets

    Submit | Open tickets | Closed tickets

    [ Ticket #1213 ] human and mouse genomic_transcript not deleted by birchadmin
    Date:
    04/05/17 15:49
    Submitted by:
    B_Fristensky
    Assigned to:
    B_Fristensky
    Category:
    Unset
    Priority:
    5
    Ticket group:
    Bug
    Resolution:
    Resolved
    Summary:
    human and mouse genomic_transcript not deleted by birchadmin
    Original submission:
    The Delete function in birchadmin deletes other databases, but fails to delete human_genomic_transcript and mouse_genomic transcript.

    These are handled as special cases in blastdbkit.py, so I suspect the problem lies there.
    Please log in to add comments and receive followups via email.
    Followups
    Comment Date By
    Fixed. The problem was that in the main procedure, the blastdbkit.py was looking for these terms in MouseSet and HumanSet, which contain the actual filenames.

    Also, there was a separate bug that prevented the script from finding the email message to send. That was fixed as well.
    04/05/17 17:44 B_Fristensky
    No results for "Dependent on ticket"
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    No other tickets are dependent on this ticket
    Ticket change history
    Field Old value Date By
    status_id Open 04/05/17 17:44 B_Fristensky
    resolution_id Not Resolved 04/05/17 17:44 B_Fristensky
    close_date 12/31/69 19:00 04/05/17 17:44 B_Fristensky
    status_id Pending 04/05/17 15:50 B_Fristensky
    assigned_to unset 04/05/17 15:50 B_Fristensky
    resolution_id Unset 04/05/17 15:50 B_Fristensky

     

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