Uses of Class
pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids.Aminoacid

Packages that use Aminoacid

pl.krakow.cmuj.bioinformatics.jellipse	Provides main application networking, file-handling and GUI support.
pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit	Provides basic chemical building blocks.
pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids	Provides general-purpose aminoacids' classes.

Uses of Aminoacid in pl.krakow.cmuj.bioinformatics.jellipse

Methods in pl.krakow.cmuj.bioinformatics.jellipse with parameters of type Aminoacid

float	Plottable.getValue(Aminoacid aacid)
float	LnCurvature.getValue(Aminoacid aacid)
float	AvgDihedralAngle.getValue(Aminoacid aacid)
float	Deviation.getValue(Aminoacid aacid)
float	AbsDeviation.getValue(Aminoacid aacid)

Uses of Aminoacid in pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit

Fields in pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit with type parameters of type Aminoacid

private java.util.List<Aminoacid>

Peptide.residues list of aminoacids in the chain

Methods in pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit that return Aminoacid

Aminoacid

Peptide.getResidue(int position)

Methods in pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit that return types with arguments of type Aminoacid

java.util.List<Aminoacid>

Peptide.getResidues()

Methods in pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit with parameters of type Aminoacid

int	Peptide.getIndexOf(Aminoacid aa)

Uses of Aminoacid in pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids

Subclasses of Aminoacid in pl.krakow.cmuj.bioinformatics.jellipse.chemtoolkit.aminoacids

class	Alanine An alanine molecule.
class	Arginine An arginine molecule.
class	Asparagine An asparagine molecule.
class	Aspartate An aspartate molecule.
class	Cysteine A cysteine molecule.
class	Glutamate A glutamate molecule.
class	Glutamine A glutamine molecule.
class	Glycine A glycine molecule.
class	Histidine A histidine molecule.
class	Isoleucine An isoleucine molecule.
class	Leucine A leucine molecule.
class	Lysine A lysine molecule.
class	Methionine A methionine molecule.
class	Phenylalanine A phenylalanine molecule.
class	Proline A proline molecule.
class	Serine A serine molecule.
class	Threonine A threonine molecule.
class	Tryptophan A trytophan molecule.
class	Tyrosine A tyrosine molecule.
class	Valine A valine molecule.