Release notes:
Several new options added or updated for clustering control and output format.
–G, -aL, -AL, -aS, -AS, and -d
-G use global sequence identity, default 1
if set to 0, then use local sequence identity, calculated as :
number of identical amino acids in alignment
divided by the length of the alignment
NOTE!!! don't use -G 0 unless you use alignment coverage controls
see options -aL, -AL, -aS, -AS
-d length of description in .clstr file, default 20
if set to 0, it takes the fasta defline and stops at first space
-aL alignment coverage for the longer sequence, default 0.0
if set to 0.9, the alignment must covers 90% of the sequence
-AL alignment coverage control for the longer sequence, default 99999999
if set to 60, and the length of the sequence is 400,
then the alignment must be >= 340 (400-60) residues
-aS alignment coverage for the shorter sequence, default 0.0
if set to 0.9, the alignment must covers 90% of the sequence
-AS alignment coverage control for the shorter sequence, default 99999999
if set to 60, and the length of the sequence is 400,
then the alignment must be >= 340 (400-60) residues
Changelog:
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