CD-HIT: Sequence clustering software - Summary

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CD-HI/CD-HIT clusters protein sequence database at high sequence identity threshold. This program can remove the high sequence redundance efficiently. Program written by: Weizhong Li

License: GNU General Public License

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Members Project admins: Dan Bolser Weizhong Li Members: 3 [View all members] Downloads Module name: cd-hit Latest release is 4.5.4 View: [Release Notes & Changelog] Download: [tgz] [View all files] Latest announcements Submit Archive Subscribe First Bug Fixed! Submitted by Dan Bolser; posted on Monday, March 08, 2004 Thanks to Luc Ducazu! CD-HIT project started at Bioinformatics.Org ! Submitted by Dan Bolser; posted on Thursday, February 19, 2004 (1 comment) Weizhong Li has moved his popular cd-hit software to bioinformatics.org and created a new open source project! cd-hit is used in a wide variety of applications, helping many people quickly and efficiently create non-redundant sequence databases at high sequence identity. Now the software is open for community development - which means you too can help improve this already excellent package! We are looking for developers and researchers of all experience levels to... Make cd-hit compatible with existing sequence IO libraries, to expand the range of allowed input formats. Develop a range of useful output formats, including XML. Package cd-hit with gnu configure utilities to expand the range of platforms for which cd-hit can be reliably used. Research the all important sequence clustering benchmark 'sub project' of cd-hit, working to develop rigorous measures of sensitivity, selectivity and optimisation for a range of clustering tools and parameters. Begin to KO the few existing bugs in the cd-hit bug list. If you use cd-hit, we would like to know! Submit Archive Subscribe