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  • CD-HIT: Sequence clustering software - Summary

    All categories :: bioinformatics software development :: CD-HIT: Sequence clustering software

    CD-HI/CD-HIT clusters protein sequence database at high sequence identity threshold. This program can remove the high sequence redundance efficiently. Program written by: Weizhong Li

    License: GNU General Public License

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    There are 3 open tickets, 32 total.
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    SCM repository
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    Project admins: Dan Bolser
    Weizhong Li

    Members: 3 [View all members]
    Module name: cd-hit
    Latest release is 4.5.4
    View: [Release Notes & Changelog]
    Download: [tgz]

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    Latest announcements
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    First Bug Fixed!
    Submitted by Dan Bolser; posted on Monday, March 08, 2004

    Thanks to Luc Ducazu!
    CD-HIT project started at Bioinformatics.Org !
    Submitted by Dan Bolser; posted on Thursday, February 19, 2004 (1 comment)

    Weizhong Li has moved his popular cd-hit software to and created a new open source project!

    cd-hit is used in a wide variety of applications, helping many people quickly and efficiently create non-redundant sequence databases at high sequence identity. Now the software is open for community development - which means you too can help improve this already excellent package!

    We are looking for developers and researchers of all experience levels to...
    • Make cd-hit compatible with existing sequence IO libraries, to expand the range of allowed input formats.
    • Develop a range of useful output formats, including XML.
    • Package cd-hit with gnu configure utilities to expand the range of platforms for which cd-hit can be reliably used.
    • Research the all important sequence clustering benchmark 'sub project' of cd-hit, working to develop rigorous measures of sensitivity, selectivity and optimisation for a range of clustering tools and parameters.
    • Begin to KO the few existing bugs in the cd-hit bug list.
    If you use cd-hit, we would like to know!
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