[University of Birmingham]
Not logged in
  • Log in
    Membership (44410+) Group hosting [?] Wiki
    Franklin Award

    About bioinformatics
    Bioinformatics jobs

    All information groups
    Online databases Online analysis tools Online education tools More tools

    All software groups
    FTP repository
    SVN & CVS repositories [?]
    Mailing lists

    News & Commentary
  • Submit
  • Archives
  • Subscribe

  • Jobs Forum
    (Career Center)
  • Submit
  • Archives
  • Subscribe
  • CD-HIT: Sequence clustering software - News

    Latest announcements
    Submit Archive Subscribe
    First Bug Fixed!
    Submitted by Dan Bolser; posted on Monday, March 08, 2004

    Thanks to Luc Ducazu!
    CD-HIT project started at Bioinformatics.Org !
    Submitted by Dan Bolser; posted on Thursday, February 19, 2004 (1 comment)

    Weizhong Li has moved his popular cd-hit software to and created a new open source project!

    cd-hit is used in a wide variety of applications, helping many people quickly and efficiently create non-redundant sequence databases at high sequence identity. Now the software is open for community development - which means you too can help improve this already excellent package!

    We are looking for developers and researchers of all experience levels to...
    • Make cd-hit compatible with existing sequence IO libraries, to expand the range of allowed input formats.
    • Develop a range of useful output formats, including XML.
    • Package cd-hit with gnu configure utilities to expand the range of platforms for which cd-hit can be reliably used.
    • Research the all important sequence clustering benchmark 'sub project' of cd-hit, working to develop rigorous measures of sensitivity, selectivity and optimisation for a range of clustering tools and parameters.
    • Begin to KO the few existing bugs in the cd-hit bug list.
    If you use cd-hit, we would like to know!
    Submit Archive Subscribe


    Copyright © 2024 Scilico, LLC · Privacy Policy