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Release notes:

New option -g added

    -g  1 or 0, default 0
        by cd-hit's default algorithm, a sequence is clustered to the first 
        cluster that meet the threshold (fast cluster). If set to 1, the program
        will cluster it into the most similar cluster that meet the threshold
        (accurate but slow mode)
        but either 1 or 0 won't change the representatives of final clusters