RESPONSIBILITIES

• Perform analysis, design, implementation, documentation and unit testing of software for the standard pipelined analysis of clinical next generation sequencing data.
• Participate in the design, implementation, testing, and deployment of extensions of the existing production QC and analysis systems, as well as new versions of them.
• Provide support of the existing production sequence QC and analysis systems, including the resolution of custom user and data retrieval requests.
• Ensure that all CLIA requirements are being met by the software and environment.
• Follow prescribed practices for software version control, testing, and release engineering.
• Apply analytical skills and creativity to solve diverse and challenging problems.
• Communicate regularly with customers and supervisory staff about plans, designs and progress.
• Present technical and analytical status in weekly meetings and contribute to publications.

REQUIREMENTS

• Excellent knowledge of public biological database and software for annotation of variant data.
• Text mining and natural language processing methods.
• Familiarity with multi-processing/threading methods, and workflow/pipeline tools.
• Experience producing code documentation.
• Exposure to statistical analysis of large datasets.
• Experience integrating software with LIMS.
• Ability to handle and prioritize multiple software requirements.
• Ability to function independently and solve technically complex problems.

HOW TO APPLY

POLICY