[Next-Generation Sequencing Book]
  • [Photo] Bozidar Yerkovich • August 2, 2002
    MODELLER is a program for homology protein modeling developed by Andrej Sali, A. Fiser, R. Sanchez, M.A. Marti-Renom, B. Yerkovich, A. Badretdinov, F. Melo, J.P. Overington & E. Feyfant.

    MODELLER is used for homology or comparative modeling of protein three-dimensional structures. The user provides an alignment of a sequence to be modeled with known related structures and MODELLER automatically calculates a model containing all non-hydrogen atoms. MODELLER implements comparative protein structure modeling by satisfaction of spatial restraints, and can perform many additional tasks, including de novo modeling of oligopeptides, optimization of various models of protein structure with respect to a flexibly defined objective function, multiple alignment of protein sequences and/or structures, clustering, searching of sequence databases, comparison of protein structures, etc.

    MODELLER is written in Fortran-90 and it runs on Mac OS X, Windows XP and several different UNIX platforms.

    Over 10,000 people use MODELLER worldwide. Porting MODELLER for Macintosh and Windows platforms should bring MODELLER to even larger group of scientists in the field.

    If you need more information about MODELLER, you can visit web site at:
    http://guitar.rockefeller.edu/modeller

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