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  • News & Commentary - Message forums

    Resources: Diversity and comparability: 50 genomic data sources in 1 place (Sponsored Content)
    Submitted by J.W. Bizzaro; posted on Monday, October 02, 2017

    Submitter

    The Repositive platform (repositive.io/?bioinformaticsorg) is an online portal indexing multiple human genomic databases, and currently the largest portal of its kind in the world. By indexing the metadata from 50+ global data sources, Repositive enables almost 2 million human genomic datasets to be browsed, and using its powerful query engine, Boolean predicates and predefined filters can help connect the research community with the genomic data they need.

    What data sources are on Repositive?

    1. 1000 Genomes – 3,911 datasets (discover.repositive.io/data[...]NOMES)
    2. Allen Institute – 4,065 datasets (discover.repositive.io/data[...]ITUTE)
    3. Array Express – 29,318 datasets (discover.repositive.io/data[...]PRESS)
    4. Corpasome – 15 datasets (discover.repositive.io/data[...]ASOME)
    5. Danish Diabetes Study – 1 dataset (discover.repositive.io/data[...]BETES)
    6. MethyCancer – 199, 607 datasets (discover.repositive.io/data[...]ANCER)
    7. dbGaP – 1,046 datasets (discover.repositive.io/data[...]DBGAP)
    8. EBI Metagenomics – 110 datasets (discover.repositive.io/data[...]OMICS)
    9. ENCODE – 10,150 datasets (discover.repositive.io/data[...]NCODE)
    10. Estonian Biocentre – 20 datasets (discover.repositive.io/data[...]ENTRE)
    11. European Variation Archive – 156 datasets (discover.repositive.io/data[...]3AEVA)
    12. ExAC – 1 dataset (discover.repositive.io/data[...]AEXAC)
    13. Expression Atlas – 1,087 datasets (discover.repositive.io/data[...]3AGXA)
    14. GABRIEL – 1 dataset (discover.repositive.io/data[...]BRIEL)
    15. GEO – 1,772 datasets (discover.repositive.io/data[...]3AGEO)
    16. Genom Austria – 10 datasets (discover.repositive.io/data[...]STRIA)
    17. Genome Asia – 1 dataset (discover.repositive.io/data[...]_ASIA)
    18. Genome in a Bottle – 52 datasets (discover.repositive.io/data[...]AGIAB)
    19. Genomes Unzipped – 16 datasets (discover.repositive.io/data[...]IPPED)
    20. Giant Consortium – 10 datasets (discover.repositive.io/data[...]RTIUM)
    21. GigaScience – 56 datasets (discover.repositive.io/data[...]IGADB)
    22. Horizon Discovery – 22 datasets (discover.repositive.io/data[...]OVERY)
    23. Human Genome Diversity Project – 1 dataset (discover.repositive.io/data[...]RSITY)
    24. Human Knockout Project – 1 dataset (discover.repositive.io/data[...]OJECT)
    25. InsilicoDB – 6,940 datasets (discover.repositive.io/data[...]CO_DB)
    26. Integrative Japanese Genome Variation Project – 3 datasets (discover.repositive.io/data[...]IJGVD)
    27. International Headache Consortium – 3 datasets (discover.repositive.io/data[...]RTIUM)
    28. Japanese Genotype-phenotype Archive – 55 datasets (discover.repositive.io/data[...]3AJGA)
    29. Kadoorie Biobank – 1 dataset (discover.repositive.io/data[...]OORIE)
    30. Magic Consortium – 7 datasets (discover.repositive.io/data[...]RTIUM)
    31. MethylomeDB – 29 datasets (discover.repositive.io/data[...]OMEDB)
    32. Mike's Genome – 1 dataset (discover.repositive.io/data[...]E_LIN)
    33. Mouse Tumor Biology Database – 425 datasets (discover.repositive.io/data[...]B_JAX)
    34. NGSmethDB – 145 datasets (discover.repositive.io/data[...]ETHDB)
    35. NIAGADS – 45 datasets (discover.repositive.io/data[...]AGADS)
    36. Open Humans – 1,610 datasets (discover.repositive.io/data[...]UMANS)
    37. Personal Genome Project – 1,114 datasets (discover.repositive.io/data[...]3APGP)
    38. Repositive – 12 datasets (discover.repositive.io/data[...]ITIVE)
    39. SRA – 9,382 datasets (discover.repositive.io/data[...]3ASRA)
    40. Simons Genome Diversity Project – 271 datasets (discover.repositive.io/data[...]RSITY)
    41. Singapore Genome Variation Project – 1 dataset (discover.repositive.io/data[...]ASGVP)
    42. Steven's Genome – 3 datasets (discover.repositive.io/data[...]ATING)
    43. Texas Cancer Cell Repository – 3,014 datasets (discover.repositive.io/data[...]TXCCR)
    44. Texas Biobank – 7 datasets (discover.repositive.io/data[...]TXCRB)
    45. The Genome of the Netherlands – 1 dataset (discover.repositive.io/data[...]LANDS)
    46. The Japanese Toxicigenomics Project – 170 dataset (discover.repositive.io/data[...]OXICO)
    47. THL Biobank (Finland) – 7 datasets (discover.repositive.io/data[...]OBANK)
    48. UCSC – 1 dataset (discover.repositive.io/data[...]AUCSC)
    49. UTHSCSA Canve Methylome System – 232 datasets (discover.repositive.io/data[...]HSCSA)
    50. Xpressomics – 6,727 datasets (discover.repositive.io/data[...]OMICS)

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