[Next-Generation Sequencing Book]
  • [Photo] Vijayaraj Nagarajan • April 20, 2018
    May 15-18, 2018
    National Institutes of Health
    9000 Rockville Pike
    Building 60, Room 162
    Bethesda, MD 20892, USA
    https://events.r20.constantcontact.com/register/eventReg?llr=k4uamblab&oeidk=a07ee7p59o00b805c1c

    OBJECTIVES

    Apart from performing the routine differential expression analysis using two different suite of tools, this hands-on training will help participants learn advanced RNA-Seq analysis techniques and tools for detecting snps, fusion genes, allele specific expressions, circular RNAs, viral/bacterial sequence identification, alternative polyadenylation and transcriptional regulatory network analysis.

    Hands-on Skills/Tools Taught:
    • Differential expression analysis: Tuxedo tools
    • Differential expression analysis: Trinity tools
    • Fusion gene analysis : Tophat-Fusion SNP detection: GATK
    • Allele specific expression : WASP
    • Circular RNA identification : circexplorer
    • Alternative polyadenylation : DaPars
    • Viral integration : VirusFinder
    • Network analysis : Cytoscape

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