Education: Hands on training in Bioinformatics for Beginners @ NIH - Bioinformatics.org

[I, Librarian]

Vijayaraj Nagarajan • August 14, 2018
Education: Hands on training in Bioinformatics for Beginners @ NIH
September 11-14, 2018
National Institutes of Health
9000 Rockville Pike
Building 60, Room 162
Bethesda, MD 20892, USA
https://faes.org/node/1405?n=BioTech%2082%20|%20Bioinformatics%20for%20Beginners%20|%204-Day%20Hands%20On%20Workshop&d4=
OBJECTIVES
The participants will be provided with end-to-end hands-on training, along with introduction to basic concepts, in using popular tools and techniques for sequence analysis, structure analysis, function prediction, biological database searching, "omics" data analysis, pathway analysis, data visualization, data curation and integration, linux, R, perl and scripting basics.

Hands-on Skills/Tools taught:

Databases: NCBI-ENTREZ, UniProt, PDB, STRING, others

Sequence analysis and function predictions: EMBOSS suite & others

Local Alignment: EMBOSS-WATER

Global Alignment: EMBOSS-NEEDLE

Similarity search: NCBI BLAST, PSI-BLAST

Multiple sequence alignment: Clustal Omega, MUSCLE, MAFFT

Phylogenetics: MrBayes, MEGA, FigTree and Dendroscope

Motif finding, analysis: MEME suite

Structure prediction, visualization & analysis: PyMOL, Chimera, iTASSER

Transcriptome analysis: NCBI GEO, Tuxedo tools, R

Enrichment analysis: DAVID

Pathway analysis: Cytoscape

Programming: Linux, R, Perl, Python

Platforms: EMBOSS, UGENE, H2O, Galaxy

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