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Education: Hands on training in Bioinformatics for Beginners @ NIH
Submitted by Vijayaraj Nagarajan; posted on Tuesday, August 14, 2018
September 11-14, 2018
National Institutes of Health
9000 Rockville Pike
Building 60, Room 162
Bethesda, MD 20892, USA
https://faes.org/node/1405?n=BioTech%2082%20|%20Bioinformatics%20for%20Beginners%20|%204-Day%20Hands%20On%20Workshop&d4=
OBJECTIVES
The participants will be provided with end-to-end hands-on training, along with introduction to basic concepts, in using popular tools and techniques for sequence analysis, structure analysis, function prediction, biological database searching, "omics" data analysis, pathway analysis, data visualization, data curation and integration, linux, R, perl and scripting basics.
Hands-on Skills/Tools taught:
- Databases: NCBI-ENTREZ, UniProt, PDB, STRING, others
- Sequence analysis and function predictions: EMBOSS suite & others
- Local Alignment: EMBOSS-WATER
- Global Alignment: EMBOSS-NEEDLE
- Similarity search: NCBI BLAST, PSI-BLAST
- Multiple sequence alignment: Clustal Omega, MUSCLE, MAFFT
- Phylogenetics: MrBayes, MEGA, FigTree and Dendroscope
- Motif finding, analysis: MEME suite
- Structure prediction, visualization & analysis: PyMOL, Chimera, iTASSER
- Transcriptome analysis: NCBI GEO, Tuxedo tools, R
- Enrichment analysis: DAVID
- Pathway analysis: Cytoscape
- Programming: Linux, R, Perl, Python
- Platforms: EMBOSS, UGENE, H2O, Galaxy
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