Bioinformatics.org
[OMICtools]
Not logged in
  • Log in
  • Bioinformatics.org
    Membership (41015+) Group hosting [?] Wiki
    Franklin Award
    Sponsorships

    Careers
    About bioinformatics
    Bioinformatics training
    Bioinformatics jobs

    Research
    All information groups
    Online databases Online analysis tools Online education tools More tools

    Development
    All software groups
    FTP repository
    SVN & CVS repositories [?]
    Mailing lists

    Forums
    News & Commentary
  • Submit
  • Archives
  • Subscribe

  • Jobs Forum
    (Career Center)
  • Submit
  • Archives
  • Subscribe
  • Career Center - Message forums

    Opportunity: Bioinformatics -- CGC Cancer Genomics Cloud Resource (Intern) @ General Dynamics Information Technology / CDC -- Atlanta, GA (US)
    Submitted by Dr. David Pot; posted on Thursday, May 09, 2019

    BACKGROUND

    Do you want to help cancer researchers optimize their use of the Google Cloud? Would you like to apply your growing bioinformatics skills to help bring the best analysis pipelines/workflows to the cancer research community? Are you interested in learning how to use the powerful Google Cloud Platform Technologies such as Genomics API, Variant Transforms, BigQuery, and Cloud ML? If any or all of this excites you, we want you to join our team! We are one of NCI's "Cancer Genomics Cloud Resources", the ISB-CGC, developed by GDIT and our partners at ISB (Institute for Systems Biology) to democratize access to data and cloud-scale computing for cancer researchers worldwide.

    The position is for a full time summer intern and can take place either from your home in the USA, or at a local GDIT office.

    RESPONSIBILITIES

    • Help create tutorials in the form of Jupyter notebooks or R scripts that demonstrate to end-users how to best use bioinformatics pipelines and tools on the Google Cloud using ISB-CGC resources.
    • Help create and prototype genomics and clinical workflows based on rapidly developing workflow technologies to allow ISB-CGC end users to optimize the use of NCI Genomics and Clinical Data in the Google Cloud Platform.
    • Help in the creation and development of portable genomics and clinical pipelines that can be run on cross-cloud platforms.

    REQUIREMENTS

    • Currently enrolled in a Masters program in Bioinformatics, Computational Biology, Genomics, or related field
    • Experience with implementing bioinformatics and genomics pipelines and workflows in a research environment
    • Proficiency with Python, UNIX/LINUX, bash scripting and R
    • Demonstrated fluency with tools and methods for next generation sequencing (NGS) data analysis (bwa, GATK, Picard, samtools, vcftools, RVTESTS, beagle, GenomicRanges, etc.)

    PREFERENCES

    Preferred experience:
    • Cancer research experience
    • Experience with cloud development ecosystems – Google and / or AWS
    • Familiar with Jupyter notebooks and the use of container technologies such as Docker
    • Implementing parallel computation for bioinformatics pipelines

    TERMS

    Summer 2019

    LOCALE

    The position is for a full time summer intern and can take place either from your home in the USA, or at a local GDIT office.

    COMPENSATION

    DOE

    HOW TO APPLY

    Please visit www.gdit.com/care[...]tern/

    Expanded view | Monitor forum | Save place

    Start a new thread:
    You have to be logged in to post a reply.

     

    Copyright © 2019 · Scilico, LLC