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Opportunity: Research Scientist / Postdoc developing machine learning techniques to diagnose rare genetic disorders @ University of Washington -- Seattle, WA (US)
Submitted by Jessica Chong; posted on Thursday, November 26, 2020
BACKGROUND
The Division of Genetic Medicine at the University of Washington in Seattle is currently recruiting for a Research Scientist/Engineer 3 (RSE3) in the Chong Lab. The RSE3 position will be in the field of human genetics. The RSE3 will research and develop machine learning methods that integrate genetic and phenotypic data to assist in diagnosis of and research into the causes of rare genetic conditions (also called Mendelian conditions, or rare diseases). The RSE3 will collaborate with clinical experts and researchers in human genetics and machine learning/data science. This position is for a Research Scientist, but a postdoc position is a possibility, depending on further discussion and the right fit.
RESPONSIBILITIES
Job duties include but are not limited to:
- Testing standard machine learning models (e.g., NMF, LDA, random forest, decision trees)
- Feature engineering (different vectorization methods to accommodate domain-specific data)
- Research, design, and create custom models to handle data with dependent relationships (e.g. ontologies)
- Adapting or developing and validating simulated and real datasets for use in model evaluation
- Enhancing data collection and extraction procedures for relevant data
- Assessing models for bias due to correlated noise
- Performing statistical analyses with traditional and machine learning methods
- Contribute to preparation of research manuscripts, reports, presentations, reviews, and summaries
- Actively participate and present summaries of work progress at group meetings
- Other duties as assigned
REQUIREMENTS
- Master's Degree in Computer Science, Data Science, Biostatistics, Computational Biology, Genetics or related field or three or more years of relevant work experience
- Basic understanding of genetics (e.g. rare/Mendelian vs complex traits, modes of inheritance)
- Ability to communicate clearly in written and oral communications is essential
- Must be comfortable working independently, taking the initiative to explore possible solutions, and doing both as part of a team
- Expertise in common data science toolkits (e.g. Python, scikit-learn)
- Excellence with machine learning techniques, particularly NMF, LDA, and decision trees
- Flexibility to take on additional tasks as necessary to accomplish team goals
Equivalent education/experience will substitute for all minimum qualifications except when there are legal requirements, such as a license/certification/registration.
PREFERENCES
- Familiarity with genetic mutation nomenclature/concepts and clinical finding terminology
- Experience developing custom probabilistic models and/or experience applying deep learning methods to build context-aware recommender systems
LOCALE
Seattle, WA but relocation to Seattle is flexible during the COVID-19 pandemic.
DEADLINE
Applications are open until position is filled.
POLICY
We especially encourage applications from groups traditionally underrepresented in STEM.
As a UW employee, you have a unique opportunity to change lives on our campuses, in our state and around the world. UW employees offer their boundless energy, creative problem solving skills and dedication to build stronger minds and a healthier world.
UW faculty and staff also enjoy outstanding benefits, professional growth opportunities and unique resources in an environment noted for diversity, intellectual excitement, artistic pursuits and natural beauty. All of which has allowed the UW to be nationally recognized as a "Great College to Work For" for six consecutive years.
The UW Department of Pediatrics is dedicated to improving the health of all children by educating physicians of the future, advancing research, advocating for children, and providing the nation's best pediatric clinical care. We are committed to building a diverse and inclusive faculty and staff.
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