[Next-Generation Sequencing Book]
  • [Photo] Kevin OKane • September 13, 2005
    MARBL [1] is an extensible, open-source (GPL) data repository and retrieval system that supports fast, efficient, keyword based retrieval of genomic sequences from multiple libraries with retrieved sequences post-processed by FASTA, and other analysis software. This application is implemented for Linux and is written in Mumps, C, and C++ with supporting components that include the Berkeley Data Base, the Perl Compatible Regular Expression Library. The system can quickly index data sets of up to 256 terabytes using a B-tree based multi-dimensional data model.

    On-line server:
    http://sidhe.cs.uni.edu/marbl.html

    Source code:
    http://www.cs.uni.edu/~okane

    Reference:
    1. O'Kane, K.C. & Lockner, M.J. March 2005. Indexing genomic sequence libraries. Information Processing & Management 41(2):265-274.

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