Data pipelining with new GDE interfaces for BIRCH - Bioinformatics.org

[Next-Generation Sequencing Book]

Brian Fristensky • January 30, 2006
Data pipelining with new GDE interfaces for BIRCH
In BIRCH Release A1.97, the programs launched by GDE have been redistributed among four specialized interfaces:

GDE: sequence data
dGDE: list data
mGDE: discrete state data
tGDE: phylogenetic tree data

The four interfaces provide a more organized framework for point-and-click data pipelining.

Examples:

When output from a program is a sequence, it appears in a new GDE window, allowing additional sequence tasks to be run on the output sequences.

Tree output is opened in a tGDE window, which can run programs that operate on trees.

A tutorial with screenshots can be found at
http://home.cc.umanitoba.ca/~psgendb/tutorials/GDE/overview/overview.html

Also, see what else is new with BIRCH, from the presentation at the Plant and Animal Genome Conference
XIV
http://home.cc.umanitoba.ca/%7Efrist/Seminars/pag14/pag14.html

The latest release of BIRCH (A1.97) is available at the BIRCH Web site under the link 'BIRCH Administrator's Guide':
http://home.cc.umanitoba.ca/~psgendb/

BIRCH is registered at Bioinformatics.Org:
http://bioinformatics.org/project/?group_id=543

Discussion forums: Data pipelining with new GDE interfaces for BIRCH

Expanded view | Monitor forum | Save place

Start a new thread:

You have to be to post a reply.

© 1998-2025 Scilico, LLC. All rights reserved.