BACKGROUND

The Section computational Science (University of Amsterdam) has a vacancy for a postdoc for the project ``A Visual Exploration environment for Analyzing gene Regulation in Developmental processes (VEARD)''. The project is financed by the Netherlands Organisation for Scientific Research, NWO, research program Visual Interactive Effective Worlds (VIEW). The project is a collaboration with the research group from Prof. R. van Liere of the Center for Mathematics and Computer Science (CWI) in Amsterdam.

In this project we propose to develop visualization techniques for quantitative research on complex shaped and variable biological and simulated objects and techniques for the visualization of abstract n-dimensional parameter spaces in models of gene regulatory networks. The project aims to develop methods and tools to extract and present geometrical information from spatial measurements and simulation, to develop visualization methods to compare simulation models and measured data, and techniques for the navigation of morphometric parameter spaces (morphospaces) and model parameter spaces. We will focus on a prototypical case study: gene regulation of development in metazoans with a relatively simple body plan (sponges and scleractinian corals). Here we will closely collaborate with Prof W.E.G. Mueller (Institut fuer Physiologische Chemie Johannes Gutenberg-Universitaet Mainz, Germany) and Prof D.J. Miller (Biochemistry and Molecular Biology, James Cook University, Australia).

RESPONSIBILITIES

The postdoc Scientific Computing and visualization will focus on the preparation of datasets (three-dimensional data morphological and gene expression data sets) in close collaboration with molecular biologists and the design and development of an integrated visualization exploration environment. This system will include models of regulatory networks controlling development, biomechanical models of growth and form, morphometric techniques and visualization methods. The visual exploration system will be used to explore virtual morphospaces.

REQUIREMENTS

A PhD in scientific computing or computational science, (computational) physics, chemistry, biology or a comparable expertise. Candidates are also expected to have an active interest in life science applications. A strong research record, evidenced by a PhD thesis and papers published in peer-reviewed journals Ability to operate in an international research team. Fluency in oral and written English.

COMPENSATION

This will be a full-time appointment (38 hours per week) for a period of two years. The gross monthly salary will be in accordance with the University regulations for academic personnel and will range from € 2,252 up to a maximum of € 3,554 (scale 10), based on a full-time appointment and depending on the number of years of professional experience.

HOW TO APPLY

Further information can be obtained from : Dr Jaap A. Kaandorp, Section Computational Science, University of Amsterdam, e-mail: jaapk[at]science.uva.nl. More information (application procedure, deadlines etc.) is available on the website:
http://www.uva.nl/vacatures