[Next-Generation Sequencing Book]
  • [Photo] Chris Sander • July 17, 2009
    We are happy to announce the release of ChiBE (Chisio BioPAX Editor) version 1.0.

    ChiBE is a free, open-source editing and visualization tool for pathway models represented by the BioPAX format (level 2). The tool features user-friendly display, viewing, and editing of pathway models. Pathway views are rendered in a feature-rich format, and may be laid out and edited with state-of-the-art layout and visualization technologies. In addition, facilities for querying a set of integrated pathways in Pathway Commons are provided. Furthermore, visualization of experimental data overlaid on pathway views is supported in ChiBE.

    ChiBE is a Java application running on Windows XP/Vista and Linux. It was built using Chisio 1.0 and Eclipse GEF 3.1 for graph visualization, Paxtools for accessing and manipulating BioPAX files, and PATIKAmad for experiment data analysis.

    AVAILABILITY: http://www.bilkent.edu.tr/~bcbi/chibe.html

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