[Next-Generation Sequencing Book]
  • [Photo] Simbios • March 2, 2010
    DATES: March 29, 2010, 9am to 5pm
    LOCALE: University of Illinois at Chicago
    URL: http://simbios.stanford.edu/RNAWorkshop.htm

    Learn new tools to generate structures and dynamical trajectories based on hypotheses, limited experimental information, and/or initial coordinates. The presented molecular modeling and simulation tools were designed to be easily applied by experimentalists to problems of current biological interest:
    • Nucleic Acid Simulation Tool (NAST)- Generates a large number of conformationally diverse coarse-grained 3D structures that satisfy user-provided secondary and tertiary contacts. http://simtk.org/home/nast
    • RNABuilder - Constructs structural models of RNA by enforcing user-provided base pairing interactions and other structural constraints. http://simtk.org/home/rnatoolbox
      • - OpenMM Zephyr - Generates a full atomic simulation using a version of the GROMACS molecular dynamics package that can be accelerated on GPUs. http://simtk.org/home/zephyr

REGISTRATION

Free to attend. Registration is required, though, and spaces are limited.

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