[Next-Generation Sequencing Book]
  • [Photo] Francis Ouellette • June 14, 2010
    DATES: July 15-16, 2010
    LOCALE: Downtown Toronto, ON
    URL: http://bioinformatics.ca/workshops/beyond

    Lead Faculty (2010): Gary Bader, Quaid Morris & Lincoln Stein
    Registration Fee for Applications received before June 16, 2010: $500 + GST
    Registration Fee for Applications received after June 16, 2010: $700 + GST

    DAY 1 - Gene Lists

    Module 1: Introduction to gene lists (Gary Bader)
    • Gene list analysis overview presenting a workflow of concepts and tools from gene list to pathway analysis
    • Lab: Practical aspects of working with gene lists
    Module 2: Finding over-represented gene functions in gene lists (Quaid Morris)
    • Over-representation analysis (ORA)
    • Use of DAVID tool Gene Set Enrichment Analysis (GSEA) and Enrichment Maps
    • Statistics for detecting over-representation e.g. hypergeometric test, GSEA
    • DAVID website tool for over-representation analysis
    • GSEA software tool
    • Assignment:Running software tools on your gene list
    DAY 2 - Networks

    Module 3: Pathway and network analysis of gene lists (Gary Bader)
    • Introduction to pathway and network analysis (Gary)
    • Basic network concepts
    • Types of pathway and network information
    • Pathway Databases: Reactome (Lincoln)
    • Using GeneMania

Discussion forums: Education: Interpreting Gene Lists from -omics Studies with Bader, Morris and Stein

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