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Education: Interpreting Gene Lists from -omics Studies with Bader, Morris and Stein
Submitted by Francis Ouellette; posted on Monday, June 14, 2010
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DATES: July 15-16, 2010
LOCALE: Downtown Toronto, ON
URL: http://bioinformatics.ca/workshops/beyond
Lead Faculty (2010): Gary Bader, Quaid Morris & Lincoln Stein
Registration Fee for Applications received before June 16, 2010: $500 + GST
Registration Fee for Applications received after June 16, 2010: $700 + GST
DAY 1 - Gene Lists
Module 1: Introduction to gene lists (Gary Bader)
- Gene list analysis overview presenting a workflow of concepts and tools from gene list to pathway analysis
- Lab: Practical aspects of working with gene lists
Module 2: Finding over-represented gene functions in gene lists (Quaid Morris)
- Over-representation analysis (ORA)
- Use of DAVID tool Gene Set Enrichment Analysis (GSEA) and Enrichment Maps
- Statistics for detecting over-representation e.g. hypergeometric test, GSEA
- DAVID website tool for over-representation analysis
- GSEA software tool
- Assignment:Running software tools on your gene list
DAY 2 - Networks
Module 3: Pathway and network analysis of gene lists (Gary Bader)
- Introduction to pathway and network analysis (Gary)
- Basic network concepts
- Types of pathway and network information
- Pathway Databases: Reactome (Lincoln)
- Using GeneMania
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