[Next-Generation Sequencing Book]
  • [Photo] Bill Cannan • October 8, 2010

    BACKGROUND

    The U.S. Department of Energy Joint Genome Institute (DOE JGI), supported by DOE's Office of Science, is committed to advancing genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. DOE JGI, headquartered in Walnut Creek, Calif., provides integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these challenges. Detailed information about the Joint Genome Institute program can be found at: http://www.jgi.doe.gov

    RESPONSIBILITIES

    Division: Genomics Division
    Department: GN-West

    The DOE Joint Genome Institute in Walnut Creek, CA, has an exciting Computational Biologist (Postdoctoral Researcher) opportunity available.

    The selected candidate will be involved in a project to study potential cellulosic biofuel feedstock species for semi-arid climates, with an initial focus on Agave species. The goal of this project is to investigate genetic and genomic adaptations of plants to semi-arid climates, with a particular focus on molecular adaptations that enable drought resistance and efficient biomass production on land that is not otherwise suitable for food production. This project will involve massive-scale data generation on the latest generation of sequencing equipment, as well as development and application of cutting-edge computational strategies for de novo transcriptome assembly and analysis from next-generation sequencing data.

    Specific Job Duties:
    • Coordinate sample acquisition with collaborators and support sample preparation for transcriptome sequencing studies.
    • In close collaboration with bioinformatics staff, apply tools for de novo transcriptome assembly and develop and apply new computational strategies for quantitative and qualitative analysis of RNA-seq data.
    • Analyze and summarize data and present findings at internal lab meetings and scientific conferences.
    • Develop and coordinate downstream experimental studies derived from this work with outside collaborators.
    • Publish in peer-reviewed journals and contribute to scientific research papers and reports.

    REQUIREMENTS

    • Ph.D. in biology, botany, genetics, genomics or a relevant related field
    • Demonstrated experience in computational analysis of sequence data
    • Experience with molecular biology techniques, such as DNA/RNA extraction and analysis methods
    • Basic understanding of plant biology
    • Strong interest in genomic questions and the use of computational strategies to derive biological insights from genomic datasets
    • Demonstrated scientific productivity through publications in relevant peer-reviewed journals
    • Effective oral and written communication skills to present findings at group meetings and conferences and publish results

    TERMS

    This is a two-year term appointment with the possibility of renewal contingent upon continued funding and satisfactory performance. Work will be performed at the DOE Joint Genome Institute in Walnut Creek, CA.

    HOW TO APPLY

    Informal inquiries about this job opportunity should be directed to Axel Visel, avisel[at]lbl.gov

    To apply please click the link below to be redirected to the lab job posting, then following the online instructions to complete the application process
    Apply Here:
    http://www.jobclub.com/banman/a.aspx?ZoneID=0&BannerID=588&AdvertiserID=43&CampaignID=2317&Task=Click&SiteID=1&RandomNumber=745162

    ARTICLE: Req Number: 25063

    POLICY

    Berkeley Lab is an affirmative action/equal opportunity employer committed to the development of a diverse workforce.

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