[Next-Generation Sequencing Book]
  • [Photo] Bill Cannan • February 2, 2011

    RESPONSIBILITIES

    Division: Genomics Division
    Department: Production Genomics

    The DOE Joint Genome Institute in Walnut Creek, CA has an exciting Software Developer position available. In cooperation with other members of the Production Informatics group, will design and implement software solutions and offer support for the production process spanning from sample acquisition stage to sequence data generation. Will support existing production Laboratory Information Management Systems (LIMS) and integrate third party LIMS with external applications. Position reports to the Production Informatics group lead.

    Specific Job Duties:
    •  Gather feedback and requirements to design and implement solutions for integrating third party LIMS with external applications including the implementation of integration scripts.
    •  Support the production staff with the third party LIMS configuration process.
    •  Develop reports using a third party reporting framework.
    •  Support existing production LIMS and its satellite systems and NCBI submission process.
    •  Apply analytical skills and creativity to solve diverse and challenging problems.
    •  Communicate regularly with customers and supervisory staff about plans, designs and progress.
    •  Follow prescribed practices for software version control, testing and release engineering.
    •  Present technical and analytical status in weekly meetings and contribute to publications.

    REQUIREMENTS

    • B.S. in Computer Science or a related scientific or technical field (or equivalent experience) and a minimum of five years related experience
    •  Demonstrated experience with the following programming languages: Perl
    • Demonstrated experience with database programming and interfaces, preferably in MySQL or Oracle
    •  Full life-cycle software development experience with the ability to work with scientific and administrative customers to define needs and priorities
    •  Effective time management, organization, and planning skills
    • Talent for working well under short deadlines and handling multiple tasks simultaneously
    • Ability to work effectively in a diverse team environment

    PREFERENCES

    • Demonstrated experience with the following: Java, Ruby on Rails, Python, Javascript, Groovy, Jasper Reports or similar reporting framework, Perl/CGI, CVS, Subversion, bash
    • Demonstrated experience in provide support for production software systems
    •  Experience developing web-based GUIs
    • Experience working with scientific users
    • Experience working with bioinformatics tools and/or analysis techniques, ideally involving next-generation sequencing platforms

    HOW TO APPLY

    Apply directly online at http://www.jobclub.com/banman/a.aspx?ZoneID=0&BannerID=772&AdvertiserID=43&CampaignID=3158&Task=Click&SiteID=1&RandomNumber=767717 and follow the instructions to complete the application process. As part of the online application process, please submit a single attachment that includes both your resume or CV and a statement of your research interests. Please be sure to reference where you found out about the position.

    ARTICLE

    Req Number: 25174

    POLICY

    Berkeley Lab is an affirmative action/equal opportunity employer committed to the development of a diverse workforce.

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