RESPONSIBILITIES:
Organization: GN-Genomics Division

The DOE Joint Genome Institute (JGI) in Walnut Creek, CA (a division of the Lawrence Berkeley National Lab) has an exciting Software Developer opportunity available in the Omics Group. The successful candidate will participate in the handling and large scale comparative analysis of metagenomic samples. Will provide feedback and participate in the development of algorithms and software tools for data handling, analysis and visualization for comparative analysis of metagenomes. Will work independently and contribute as a member of a dynamic, multidisciplinary team of biologists, bioinformaticians, computer scientists and software developers. Position reports to the Omics Group Lead.

The selected candidate will be hired at the Software Developer 2 or 3 classification depending upon the candidate's level of experience and qualifications.

Specific job duties:
Essential-

• Gather feedback and requirements to develop software for the handling of metagenomic data and automation of analytical procedures.
• Provide comparative analysis of prokaryotic genomes.
• Apply standard bioinformatics tools for the analysis of genomic data.
• Communicate regularly with customers and supervisory staff about plans, designs, and progress.
• Interact with peers within and outside of the JGI to ensure efficient communication and completion of analysis projects.
• Apply analytical skills and creativity to troubleshoot problems of a moderate scope.

Marginal-

• Develop and present updates and reports at group meetings.
• Support internal and external users with data exchange and custom data analysis.
• Participate in preparation of publications.

Essential Duties for the Software Developer 3 - In addition to the required duties for a level 2, the Software Developer 3 will:

• Work at a higher level of independence and responsibilities in carrying out assignments.
• Develop and implement substantial, known or novel, computational methods to improve the analysis capabilities and output of the group.
• Troubleshoot more complex systems and data analysis problems.

REQUIREMENTS:

• Bachelor's degree in Computer Science, Engineering, Bioinformatics, or related field with a minimum of two years of work experience, or an equivalent combination of education and experience. Advanced degree (MS / Ph.D.) preferred.
• Demonstrated programming skills utilizing Perl, C/C++ and UNIX.
• Demonstrated experience with SQL.
• Knowledge of Biology/Biochemistry and understanding of key and complex biological concepts (genes, pathways, phylogeny).
• Understanding of standard sequencing analysis methods (assembly, gene calling, functional annotation).
• Demonstrated experience with the processing and analysis of metagenomic data.
• Demonstrated experience utilizing standard bioinformatics tools and databases.
• Demonstrated experience in applying statistical methods to biological problems (data comparison and data mining).
• Strong problem-solving, decision-making, and analytical skills to make sound judgments and recommend creative solutions to moderately complex problems.
• Strong interpersonal skills with the ability work independently and as a team member in a diverse team environment.
• Ability to organize and present reports to collaborators, JGI staff, management, and sponsors.
• Ability to interact with work groups and collaborators inside and outside of the JGI.
• Experience and skill in preparing research publications.

Essential Qualifications for the Software Developer 3 - In addition to the required qualifications for the Software Developer 2, the Software Developer 3 will have:

• Bachelor's degree in Computer Science, Engineering, Bioinformatics, or related field with a minimum of five years of work experience, or an equivalent combination of education and experience. Advanced degree (MS / Ph.D.) preferred.
• Demonstrated expertise processing large volumes of data, whole-genome data analysis, and comparative genomics.
• Ability to troubleshoot complex systems and data analysis problems.

HOW TO APPLY:
Apply directly online at http://www.jobclub.com/banman/a.aspx?ZoneID=0&BannerID=1052&AdvertiserID=43&CampaignID=4164&Task=Click&SiteID=1&RandomNumber=746586 and follow the on-line instructions to complete the application process.

POLICY:
Berkeley Lab is an affirmative action/equal opportunity employer committed to the development of a diverse workforce.