[Next-Generation Sequencing Book]
  • [Photo] Bill Cannan • February 3, 2012

    RESPONSIBILITIES

    Organization: GN - Genomics Division

    The DOE Joint Genome Institute (JGI) in Walnut Creek, CA (a division of the Lawrence Berkeley National Lab) has opportunities available for experienced software developers. In cooperation with other units of JGI, the selected candidates will be responsible for designing, developing and implementing software solutions to manage and process data from new sequencing technologies. Will work on problems of a diverse scope, exercise independent judgment and select appropriate methods and techniques for solving and recommending solutions. Assignments will span the full software development lifecycle, including participation in requirements gathering, implementation, testing, and deployment. Positions report to the Genomic Technologies Informatics Group Lead.

    Specific Job Duties:
    Essential-
    • Design, implement, test and deploy software for the handling of new sequencing technologies and techniques, and corresponding data with the eventual goal of integrating these systems with the institution's existing informatics infrastructure.
    • Gather feedback and requirements to develop software using a mix of the following: Java, Perl, Perl/CGI, Javascript, CVS, PL/SQL.
    • Interact with peers to ensure efficient communication and completion of projects.
    • Apply analytical skills and creativity to solve diverse and challenging problems.
    Marginal-
    • Stay current with new sequencing technologies.
    • Develop and present updates and reports at group meetings.

    REQUIREMENTS

    • B.S. in Computer Engineering, Bioinformatics or a related field with a minimum of five years related experience, or an equivalent combination of education and experience. MS degree is preferred
    • Demonstrated experience with the following: Java and/or Perl, UNIX and SQL
    • Demonstrated experience with database programming and interfaces
    • Full life-cycle software development experience with the ability to work with scientific and administrative peers to define needs and priorities
    • Ability to effectively learn and apply new technology concepts to troubleshoot and solve problems and challenges of a diverse scope
    • Effective time management, organization, and planning skills
    • Talent for working well under short deadlines and handling multiple tasks simultaneously
    • Ability to work effectively in a diverse team environment

    PREFERENCES

    • Demonstrated experience with the following: Spring/JEE or similar programming frameworks, Tomcat, Apache, Subversion or other version control software
    • Demonstrated experience in providing support for software solutions
    • Experience developing web-based GUIs
    • Experience working with scientific users
    • Experience working with bioinformatics tools and/or analysis techniques, ideally involving next-generation sequencing platforms

    HOW TO APPLY

    For a detailed job description and instructions regarding how to apply, please visit: https://lbl.taleo.net/careersection/2/jobdetail.ftl?lang=en&job=74150

    POLICY

    Berkeley Lab is an affirmative action/equal opportunity employer committed to the development of a diverse workforce.

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