• [Photo] Bill Cannan June 29, 2012

    RESPONSIBILITIES

    Organization: GN-Genomics

    The DOE Joint Genome Institute (JGI) in Walnut Creek, CA (a division of the Lawrence Berkeley National Lab) has an exciting Software Developer position available to support the Quality Control (QC) and Analysis Team. Will work with customers and other software developers to support and extend the production sequence QC and analysis systems including a range of database-backed bioinformatics analysis pipelines for the automated processing of sequence data. Assignments will span the full software development lifecycle, including participation in requirements gathering, implementation, testing, and deployment existing systems. Position reports to the Production Informatics group lead.

    Specific Job Duties:
    • Participate in the design, implementation, testing, and deployment of extensions of the existing production QC and analysis systems, as well as new versions of them.
    • Provide support of the existing production sequence QC and analysis systems, including the resolution of custom user and data retrieval requests.
    • Develop software using a mix of the following: Python, Perl/CGI, Javascript, CVS, Ruby, Ruby (with Rails), Java, PL/SQL.
    • Follow prescribed practices for software version control, testing, and release engineering.
    • Apply analytical skills and creativity to solve diverse and challenging problems.
    • Communicate regularly with customers and supervisory staff about plans, designs and progress.
    • Follow prescribed practices for software version control, testing, and release engineering.
    • Attend workshops and conferences in appropriate areas.
    • Present technical and analytical status in weekly meetings and contribute to publications.

    REQUIREMENTS

    Key Success Factors:
    Essential -
    • B.S. in Computer Science or a related scientific field (or equivalent experience) and a minimum of five years related experience.
    • Demonstrated success designing and implementing systems and software in a scientific or technical environment, e.g., University, National Laboratory, corporate R&D center or automated manufacturing facility.
    • Full life-cycle software development experience with the ability to work with scientific and administrative customers to define needs and priorities.
    • Demonstrated experience with Python and experience with database design and performance tuning in MySQL.
    • Ability to apply analytical skills and creativity to solve diverse and challenging problems.
    • Effective time management, organization, and planning skills with the ability to allocate resources and assign work to meet goals and deadlines.
    • Talent for working well under short deadlines and handling multiple tasks simultaneously.
    • Ability to work effectively in a diverse team environment.

    PREFERENCES

    Preferred-
    • Demonstrated experience with at least some of the following: MySQL, Oracle, Perl/CGI, Javascript, Ruby (with Rails), Java, PL/SQL, CVS, Subversion.
    • Experience developing web-based GUIs.
    • Experience working with lab information management systems (LIMS).
    • Experience working with bioinformatics tools and/or analysis techniques.

    HOW TO APPLY

    Apply directly online at http://bit.ly/lbl74817Bioinformatics and follow the instructions to complete the application process.

    POLICY

    Berkeley Lab is an Affirmative Action/Equal Employment Opportunity employer committed to the development of a diverse workforce.

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