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  • [Photo] Sebastian Boecker • March 22, 2006

    BACKGROUND

    The newly founded Bioinformatics group at the Friedrich-Schiller-Universitaet in Jena, Germany is seeking three PhD students or PostDocs. The research focus of the group the mathematical and computer science foundations of biological problems. The research group will be established in Jena starting April 2006 with 4 PhD students.

    RESPONSIBILITIES

    Focus of research is the development and evaluation of models and algorithms in current bioinformatics.

    Proposed research topics are:
    • Parametrized complexity of bioinformatics problems
    • Reconstruction and analysis of metabolic networks and pathways
    • Integration of gene cluster analysis into phylogenetic methods, modeling and algorithms for finding gene clusters with errors
    • Finding regulatory motif patterns
    • Computational mass spectrometry
    • Compressed data structures
    The position includes teaching responsibilities (about 4 hours/week) and administration responsibilities.

    REQUIREMENTS

    Applicants must hold a diploma or Master degree in Bioinformatics, Mathematics, or Computer Science. Applicants must have a solid background in combinatorics and algorithm design, as well as an interest in interdisciplinary work (Mathematics, Computer Science, Biology). The ability to write code, preferably in C++ would be helpful.

    PREFERENCES

    University education in one of the following: biology, molecular biology, genomics, genetics, biochemistry, physics. Experience with existing bioinformatics approaches. Good communication skills in English.

    TERMS

    The position offers the possibility to earn a doctorate in Bioinformatics.

    COMPENSATION

    Bat IIa Ost (EUR 34000 to 40000 per year) for 3-4 years

    HOW TO APPLY

    Send your application including CV, list of publication (if applicable), diplomas and certificates, and three email contacts for references to:

    Lehrstuhl fuer Bioinformatik
    Institut fuer Informatik
    Friedrich-Schiller-Universitaet Jena
    Ernst-Abbe-Platz 2
    D-07743 Jena

    DEADLINE

    Recruitment starts April 2006.

Discussion forums: Opportunity: PhD position in ALGORITHMIC BIOINFORMATICS--Jena, Germany

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application for phd position in bioinformatic
Submitted by shradha gupta ; posted on Thursday, March 23, 2006
SHRADHA GUPTA (M.Sc. Bioinformatics) Institute of Interdisciplinary Studies, Nehru Science Center, University of Allahabad, Allahabad â?? 211016, INDIA. Objective: To do challenging work for a Dynamic Organization that provides ample scope for learning and career advancement through result oriented means in the field of science to become a specialist in Bioinformatics. Completed M.Sc. (Bioinformatics) from University of Allahabad Batch 2003-05 with 71%, 2nd in class. Subjects: 1) Math, 2) Physics, 3) Computer Applications, 4) Statistics, 5) Biochemistry & Biophysics, 6) Molecular Biology & Molecular Genetics, 7) Data Structures through C, 8) Some Concepts of Basic sciences, 9) Fragment Assembly, Gene Mapping & Sequencing of DNA, 10) Biological Data Bases, Search & Analysis, 11) Languages, Algorithms & Tools in Genomics, 12) Molecular structure prediction & Visualization, 13) Molecular Phylogeny & Molecular Evolution, 14) Proteomics & Transcriptomics, 15) Computer Model of Evolution, 16) Computer Aided Drug Designing. EXPERIENCE July 2005 - December 2005 at CBMR, SGPGI, Lucknow, India Job Profile: To determine the structure of lofepramine hydrochloride, 5-hydroxy tryptophan, trimipramine maleate salt and doxylamine succinate and various small organic and inorganic compounds using NMR Spectroscopy. Achievements: completed the project successfully. SHORT COURSE: Short-term course on â??Bioinformatics Tools and their Applicationsâ?? at Department of Biochemical Engineering & Biotechnology, IIT, New Delhi, India. Projects: 1. Mini project under the guidance of Prof. A.K. Gupta, Coordinator Bioinformatics Program, University of Allahabad. The topic was â??Protein Structure prediction through Molecular Dynamics using the software GROMACS â??. Dissertation work: Structure prediction of lofepramine hydrochloride using NMR Spectroscopy Skills: Programming â?¢Operating systems: MS-DOS, Windows 98 / XP/NT â?¢ Programming Languages: C, C++ and Perl â?¢ Packages: MS Office 2003, Adobe Packages . Software Package: Matlab â?¢ Web based programming: HTML Bioinformatics softwareâ??s & tools â?¢ Molecular Visualization Software: Rasmol, Cn3D, VMD, Swiss PDB Viewer â?¢ Alignment Tools: BLAST, FASTA, ClustalW package â?¢ Phylogeny package: Treecon, Phylip. Wet lab â?¢ Biochemistry: Qualitative and quantitative test of protein and carbohydrate. â?¢ Analytical: SDS-PAGE, Agarose Gel Electrophoresis Delivered Seminars: 1. Biological software Applicable in Bioinformatics. 2. DNA Micro Array Other Relevant Information: 1. Working Model & Poster presentation in Nehru Science center, University of Allahabad on the eve of Science day. 2. Chief Editor of departmental annual scientific magazine â??Bioinformatics Gatewayâ??. Educational qualification: Exam Passed Board/University Year of Passing Subjects Percentage High School I.C.S.E. 1998 Hindi, English, Maths, 79.60 Science, Social Science, Commerce Intermediate I.S.C. 2000 English, Physics, 58.75 Chemistry, Biology B.Sc. University of Pune 2003 Botany, Chemistry, 71.42(Hons.) Zoology Personal Details: Fatherâ??s Name: Mr. Jeevan Gupta Motherâ??s Name: Mrs. Saroj Gupta Date of Birth: February 18, 1983 Nationality: Indian Sex: Female Linguistic Proficiency: English, Hindi and Marathi Permanent address: 22/25 Himmat Ganj, Purshottam Nagar, Allahabad â?? 211016, (U.P.), INDIA Contacts: 0532-2615624 Mobile No: 9415283904 E-mail: army_shradha@yahoo.co.in PLACE: Allahabad DATE: (Shradha Gupta) REFERNECES: 1. Prof. A. K. Gupta Head, Department of Electronics and Communication, J.K.Institute of Applied Physics and Technology, Coordinator M.Sc. Bioinformatics Program, University of Allahabad. Allahabad-211002. India. 2. Prof. D.K. Gupta Head, Department of Biochemistry, Co-coordinator M.Sc. Bioinformatics Program, University of Allahabad, Allahabad-211002. India. 3. Dr. Shanthy Sundaram Reader, Center for Biotechnology, University of Allahabad, Allahabad-211002. India.

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e-mail?
Submitted by Denis Vorobiev ; posted on Thursday, March 23, 2006
Could I apply by e-mail? I am a person with a 9-years experience in the algorithmic bioinformatics wishing to get a PhD degree in Europe. Please contact me: vdg75@mail.ru
application for phd position in bioinformatic
Submitted by shradha gupta ; posted on Thursday, March 23, 2006
SHRADHA GUPTA (M.Sc. Bioinformatics) Institute of Interdisciplinary Studies, Nehru Science Center, University of Allahabad, Allahabad â?? 211016, INDIA. Objective: To do challenging work for a Dynamic Organization that provides ample scope for learning and career advancement through result oriented means in the field of science to become a specialist in Bioinformatics. Completed M.Sc. (Bioinformatics) from University of Allahabad Batch 2003-05 with 71%, 2nd in class. Subjects: 1) Math, 2) Physics, 3) Computer Applications, 4) Statistics, 5) Biochemistry & Biophysics, 6) Molecular Biology & Molecular Genetics, 7) Data Structures through C, 8) Some Concepts of Basic sciences, 9) Fragment Assembly, Gene Mapping & Sequencing of DNA, 10) Biological Data Bases, Search & Analysis, 11) Languages, Algorithms & Tools in Genomics, 12) Molecular structure prediction & Visualization, 13) Molecular Phylogeny & Molecular Evolution, 14) Proteomics & Transcriptomics, 15) Computer Model of Evolution, 16) Computer Aided Drug Designing. EXPERIENCE July 2005 - December 2005 at CBMR, SGPGI, Lucknow, India Job Profile: To determine the structure of lofepramine hydrochloride, 5-hydroxy tryptophan, trimipramine maleate salt and doxylamine succinate and various small organic and inorganic compounds using NMR Spectroscopy. Achievements: completed the project successfully. SHORT COURSE: Short-term course on â??Bioinformatics Tools and their Applicationsâ?? at Department of Biochemical Engineering & Biotechnology, IIT, New Delhi, India. Projects: 1. Mini project under the guidance of Prof. A.K. Gupta, Coordinator Bioinformatics Program, University of Allahabad. The topic was â??Protein Structure prediction through Molecular Dynamics using the software GROMACS â??. Dissertation work: Structure prediction of lofepramine hydrochloride using NMR Spectroscopy Skills: Programming â?¢Operating systems: MS-DOS, Windows 98 / XP/NT â?¢ Programming Languages: C, C++ and Perl â?¢ Packages: MS Office 2003, Adobe Packages . Software Package: Matlab â?¢ Web based programming: HTML Bioinformatics softwareâ??s & tools â?¢ Molecular Visualization Software: Rasmol, Cn3D, VMD, Swiss PDB Viewer â?¢ Alignment Tools: BLAST, FASTA, ClustalW package â?¢ Phylogeny package: Treecon, Phylip. Wet lab â?¢ Biochemistry: Qualitative and quantitative test of protein and carbohydrate. â?¢ Analytical: SDS-PAGE, Agarose Gel Electrophoresis Delivered Seminars: 1. Biological software Applicable in Bioinformatics. 2. DNA Micro Array Other Relevant Information: 1. Working Model & Poster presentation in Nehru Science center, University of Allahabad on the eve of Science day. 2. Chief Editor of departmental annual scientific magazine â??Bioinformatics Gatewayâ??. Educational qualification: Exam Passed Board/University Year of Passing Subjects Percentage High School I.C.S.E. 1998 Hindi, English, Maths, 79.60 Science, Social Science, Commerce Intermediate I.S.C. 2000 English, Physics, 58.75 Chemistry, Biology B.Sc. University of Pune 2003 Botany, Chemistry, 71.42(Hons.) Zoology Personal Details: Fatherâ??s Name: Mr. Jeevan Gupta Motherâ??s Name: Mrs. Saroj Gupta Date of Birth: February 18, 1983 Nationality: Indian Sex: Female Linguistic Proficiency: English, Hindi and Marathi Permanent address: 22/25 Himmat Ganj, Purshottam Nagar, Allahabad â?? 211016, (U.P.), INDIA Contacts: 0532-2615624 Mobile No: 9415283904 E-mail: army_shradha@yahoo.co.in PLACE: Allahabad DATE: (Shradha Gupta) REFERNECES: 1. Prof. A. K. Gupta Head, Department of Electronics and Communication, J.K.Institute of Applied Physics and Technology, Coordinator M.Sc. Bioinformatics Program, University of Allahabad. Allahabad-211002. India. 2. Prof. D.K. Gupta Head, Department of Biochemistry, Co-coordinator M.Sc. Bioinformatics Program, University of Allahabad, Allahabad-211002. India. 3. Dr. Shanthy Sundaram Reader, Center for Biotechnology, University of Allahabad, Allahabad-211002. India.

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