AVAILABILITY

EXAMPLES

• All 301 Arabidopsis ATH1 experiments are listed at: http://www.expressionbrowser.com/arab/index.jsp?tab=1
• Gene View displays all treatments that affect the expression of a selected gene. An example Gene View of Arabidopsis PR-1 gene is at: http://www.expressionbrowser.com/arab/displayFeature.jsp?id=1001343&tab=4
• T/C View (Treatment over Control View) displays the expression of all genes under a selected T/C condition. An example of T/C view is at: http://expressionbrowser.com/arab/displayPair.jsp?id=2056966
• The user can get co-regulated genes of any specific gene. For example, PR-1 has 1305 co-regulation genes that are listed in the order of relationship with PR-1 (refer to http://www.expressionbrowser.com/arab/displayFeature.jsp?id=1001343&tab=4); COR15A has 1467 co-regulated genes (refer to http://www.expressionbrowser.com/arab/displayFeature.jsp?id=1004204&tab=4). GEB also provide experiment condition network (T/C network) so that users can get all conditions (T/Cs) that have similar expression profile with a selected experiment condition (T/C). For example, a T/C "16 hr Pseudomonas infection" has 199 T/Cs that have similar expression profiles (http://www.expressionbrowser.com/arab/displayPair.jsp?id=2056966&tab=4); "cold 24 hr effects" has 49 T/Cs that have similar expression profiles with it (http://www.expressionbrowser.com/arab/displayPair.jsp?id=2030739&tab=4). The gene network and T/C network (condition network) provides a cross-experimental and systematic understanding on Arabidopsis gene expression as totality.