Current address:
Prince Felipe Research Centre (CIPF)
Avda. Autopista del Saler 16, Camino de las Moreras
Valencia,
Valencia
Spain
Education:
PhD in Bioinformatics
Prince Felipe Research Centre and Polytechnic University of Valencia
2005 -
2010
MSc (DEA) in Declarative Programming and Software Engineering
Polytechnic University of Valencia
2004 -
2005
(European) Computer Science Engineer
University of Applied Sciences, Osnabrueck
2000 -
2004
Experience:
PostDoc Researcher
Prince Felipe Research Centre, Bioinformatics Department
2007 -
2010
Visiting Researcher
Department of genome-oriented Bioinformatics, Technical University of Munich (TUM) and MIPS
2008 -
2008
PhD Student
Biomedical Informatics Group at Polytechnic University of Valencia
2004 -
2007
Skills:
Languages: German, English, Spanish - fluent
Bioinformatics: Transciptomics (Microarrays), PPIs, Genome Analyses, Visualisation, Functional Genomics, NGS, etc...
Programming: Java (EE), R, Python, Perl, PHP, C, C-PlusPlus, Csharp, Tex, Bash, etc...
Systems: MySql, Apache, Tomcat, Axis, SGE, Linux, Eclipse, etc...
Statistics/AI/ML: Quantitative, Enrichement Analysis, Differencial Expression, Clustering, etc...
Activities:
Development, maintainment, user-support and teaching of/for Blast2GO, a universal tool for annotation, visualization and analysis in functional genomics research.
Interests:
Functional Genomics
Functional annotation
Function-based data mining of genomics data
Bio-Ontologies
Biological data integration and visualization
References:
Conesa,A., Goetz,S., Garcia-Gomez,JM. et al. Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 2005 21: 3674-3676
Goetz,S., Garcia-Gomez,JM., Terol,J.,Williams,T., Nueda,MJ., Robles,M., Talon,M., Dopazo,J., Conesa,A. High-throughput functional annotation and data mining with the Blast2GO suite. Nucleic Acids Res. 2008; 36(10): 3420-3435.
Al-Shahrour,F., Carbonell,J., Minguez,P., Goetz,S., Conesa,A., Tarraga,J., Medina,I., Alloza, E., Montaner,D., Dopazo,J (2008) Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments. Nucl. Acids Res.,gkn318
Minguez,P., Goetz,S., Montaner,D., Al-Shahrour,F., Dopazo,J. (2009) SNOW, a web-based tool for the statistical analysis of protein-protein interaction networks. Nucleic Acids Res.; doi: 10.1093/nar/gkp402
Conesa,A., Goetz,S. (2008) Blast2GO: A Comprehensive Suite for Functional Analysis in Plant Genomics. International Journal of Plant Genomics, 2008, 1-12, doi:10.1155/2008/619832
Other:
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