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User profile
Current address
Avda. Autopista del Saler 16, Camino de las Moreras
Valencia, Valencia
Spain
Education
Prince Felipe Research Centre and Polytechnic University of Valencia
2005 — 2010
Polytechnic University of Valencia
2004 — 2005
University of Applied Sciences, Osnabrueck
2000 — 2004
Experience
Prince Felipe Research Centre, Bioinformatics Department
2007 — 2010
Department of genome-oriented Bioinformatics, Technical University of Munich (TUM) and MIPS
2008 — 2008
Biomedical Informatics Group at Polytechnic University of Valencia
2004 — 2007
Skills
- Languages: German, English, Spanish - fluent
- Bioinformatics: Transciptomics (Microarrays), PPIs, Genome Analyses, Visualisation, Functional Genomics, NGS, etc...
- Programming: Java (EE), R, Python, Perl, PHP, C, C-PlusPlus, Csharp, Tex, Bash, etc...
- Systems: MySql, Apache, Tomcat, Axis, SGE, Linux, Eclipse, etc...
- Statistics/AI/ML: Quantitative, Enrichement Analysis, Differencial Expression, Clustering, etc...
Activities
- Development, maintainment, user-support and teaching of/for Blast2GO, a universal tool for annotation, visualization and analysis in functional genomics research.
Interests
- Functional Genomics
- Functional annotation
- Function-based data mining of genomics data
- Bio-Ontologies
- Biological data integration and visualization
References
Conesa,A., Goetz,S., Garcia-Gomez,JM. et al. Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 2005 21: 3674-3676
Goetz,S., Garcia-Gomez,JM., Terol,J.,Williams,T., Nueda,MJ., Robles,M., Talon,M., Dopazo,J., Conesa,A. High-throughput functional annotation and data mining with the Blast2GO suite. Nucleic Acids Res. 2008; 36(10): 3420-3435.
Al-Shahrour,F., Carbonell,J., Minguez,P., Goetz,S., Conesa,A., Tarraga,J., Medina,I., Alloza, E., Montaner,D., Dopazo,J (2008) Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments. Nucl. Acids Res.,gkn318
Minguez,P., Goetz,S., Montaner,D., Al-Shahrour,F., Dopazo,J. (2009) SNOW, a web-based tool for the statistical analysis of protein-protein interaction networks. Nucleic Acids Res.; doi: 10.1093/nar/gkp402
Conesa,A., Goetz,S. (2008) Blast2GO: A Comprehensive Suite for Functional Analysis in Plant Genomics. International Journal of Plant Genomics, 2008, 1-12, doi:10.1155/2008/619832
Groups (0)
News items (3)
| News & Commentary |
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Education: Course on Statistical Methods for mRNA-Seq and ChIP-seq using Bioconductor
Submitted by Stefan Goetz; posted on Wednesday, October 6, 2010 |
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Education: Course on automated functional annotation and data-mining
Submitted by Stefan Goetz; posted on Wednesday, July 28, 2010 |
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Education: Course on automated functional annotation and data-mining
Submitted by Stefan Goetz; posted on Tuesday, July 14, 2009 (2 comments) |
Forum messages (2)
| News & Commentary |
|
Course on Statistical Methods for mRNA-Seq and ChIP-seq using Bioconductor
Submitted by Stefan Goetz;
posted on Wednesday, October 6, 2010
|
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Education: Course on automated functional annotation and data-mining
Submitted by Stefan Goetz;
posted on Wednesday, July 21, 2010
|