Basic Information
Gene ID 415104
Gene Name ctcf
Full Name CCCTC-binding factor
Organism Danio rerio [7955]

Cross Reference
UniProt Q6JAA4 UniGene Dr.53867
PDB NULL OMIM NULL
KEGG dre:415104 UCSC NULL

Protein Interactions
DIP NULL
IntAct NULL
MINT NULL
STRING 7955.ENSDARP00000073595

Ensembl/RefSeq
Transcript ID
Protein ID
Gene ID
ENSEMBL
REFSEQ
REFSEQ

InterPro Annotation
Protein Program Term IPRS Start End Score Description
ENSDARP00000073595 Gene3D G3DSA:3.30.160.60 IPR013087 304 335 5.80e-09 Zinc finger C2H2-type/integrase DNA-binding domain
ENSDARP00000073595 Gene3D G3DSA:3.30.160.60 IPR013087 336 363 2.60e-09 Zinc finger C2H2-type/integrase DNA-binding domain
ENSDARP00000073595 Gene3D G3DSA:3.30.160.60 IPR013087 364 392 6.40e-09 Zinc finger C2H2-type/integrase DNA-binding domain
ENSDARP00000073595 Gene3D G3DSA:3.30.160.60 IPR013087 393 419 2.10e-12 Zinc finger C2H2-type/integrase DNA-binding domain
ENSDARP00000073595 Gene3D G3DSA:3.30.160.60 IPR013087 420 438 4.20e-11 Zinc finger C2H2-type/integrase DNA-binding domain
ENSDARP00000073595 Gene3D G3DSA:3.30.160.60 IPR013087 439 472 9.60e-12 Zinc finger C2H2-type/integrase DNA-binding domain
ENSDARP00000073595 Gene3D G3DSA:3.30.160.60 IPR013087 508 536 6.30e-08 Zinc finger C2H2-type/integrase DNA-binding domain
ENSDARP00000073595 Gene3D G3DSA:3.30.160.60 IPR013087 537 555 7.50e-10 Zinc finger C2H2-type/integrase DNA-binding domain
ENSDARP00000073595 Gene3D G3DSA:3.30.160.60 IPR013087 556 583 6.70e-10 Zinc finger C2H2-type/integrase DNA-binding domain
ENSDARP00000073595 Pfam PF00096 IPR007087 477 500 3.20e-02 Zinc finger, C2H2
ENSDARP00000073595 Pfam PF00096 IPR007087 595 617 1.40e-03 Zinc finger, C2H2
ENSDARP00000073595 ProSitePatterns PS00028 IPR007087 308 328 - Zinc finger, C2H2
ENSDARP00000073595 ProSitePatterns PS00028 IPR007087 336 356 - Zinc finger, C2H2
ENSDARP00000073595 ProSitePatterns PS00028 IPR007087 364 385 - Zinc finger, C2H2
ENSDARP00000073595 ProSitePatterns PS00028 IPR007087 449 470 - Zinc finger, C2H2
ENSDARP00000073595 ProSitePatterns PS00028 IPR007087 479 500 - Zinc finger, C2H2
ENSDARP00000073595 ProSitePatterns PS00028 IPR007087 509 529 - Zinc finger, C2H2
ENSDARP00000073595 ProSitePatterns PS00028 IPR007087 537 557 - Zinc finger, C2H2
ENSDARP00000073595 ProSitePatterns PS00028 IPR007087 565 586 - Zinc finger, C2H2
ENSDARP00000073595 ProSiteProfiles PS50157 IPR007087 306 333 0.00e-00 Zinc finger, C2H2
ENSDARP00000073595 ProSiteProfiles PS50157 IPR007087 334 361 0.00e-00 Zinc finger, C2H2
ENSDARP00000073595 ProSiteProfiles PS50157 IPR007087 362 390 0.00e-00 Zinc finger, C2H2
ENSDARP00000073595 ProSiteProfiles PS50157 IPR007087 391 418 0.00e-00 Zinc finger, C2H2
ENSDARP00000073595 ProSiteProfiles PS50157 IPR007087 419 446 0.00e-00 Zinc finger, C2H2
ENSDARP00000073595 ProSiteProfiles PS50157 IPR007087 447 475 0.00e-00 Zinc finger, C2H2
ENSDARP00000073595 ProSiteProfiles PS50157 IPR007087 477 505 0.00e-00 Zinc finger, C2H2
ENSDARP00000073595 ProSiteProfiles PS50157 IPR007087 507 534 0.00e-00 Zinc finger, C2H2
ENSDARP00000073595 ProSiteProfiles PS50157 IPR007087 535 562 0.00e-00 Zinc finger, C2H2
ENSDARP00000073595 ProSiteProfiles PS50157 IPR007087 563 586 0.00e-00 Zinc finger, C2H2
ENSDARP00000073595 ProSiteProfiles PS50157 IPR007087 595 622 0.00e-00 Zinc finger, C2H2
ENSDARP00000073595 SMART SM00355 IPR015880 306 328 4.10e-07 Zinc finger, C2H2-like
ENSDARP00000073595 SMART SM00355 IPR015880 334 356 2.40e-05 Zinc finger, C2H2-like
ENSDARP00000073595 SMART SM00355 IPR015880 362 385 7.40e-06 Zinc finger, C2H2-like
ENSDARP00000073595 SMART SM00355 IPR015880 391 413 1.70e-05 Zinc finger, C2H2-like
ENSDARP00000073595 SMART SM00355 IPR015880 419 441 6.80e-06 Zinc finger, C2H2-like
ENSDARP00000073595 SMART SM00355 IPR015880 447 470 6.70e-04 Zinc finger, C2H2-like
ENSDARP00000073595 SMART SM00355 IPR015880 477 500 3.20e-04 Zinc finger, C2H2-like
ENSDARP00000073595 SMART SM00355 IPR015880 507 529 1.80e-04 Zinc finger, C2H2-like
ENSDARP00000073595 SMART SM00355 IPR015880 535 557 1.20e-04 Zinc finger, C2H2-like
ENSDARP00000073595 SMART SM00355 IPR015880 563 586 8.60e-05 Zinc finger, C2H2-like
ENSDARP00000073595 SMART SM00355 IPR015880 595 615 3.70e-02 Zinc finger, C2H2-like
ENSDARP00000073595 SMART SM00384 IPR017956 700 712 2.10e-03 AT hook, DNA-binding motif

Pfam Annotation
Protein Pfam ID E.value Name Description
ENSDARP00000073595 PF13465 0 zf-H2C2_2 Zinc-finger double domain
ENSDARP00000073595 PF00096 2.5e-30 zf-C2H2 Zinc finger, C2H2 type
ENSDARP00000073595 PF13894 1.1e-22 zf-C2H2_4 C2H2-type zinc finger
ENSDARP00000073595 PF12171 1.3e-06 zf-C2H2_jaz Zinc-finger double-stranded RNA-binding
ENSDARP00000073595 PF13909 3.6e-05 zf-H2C2_5 C2H2-type zinc-finger domain

Gene Ontology Annotation
Protein Entry Name Space Description
ENSDARP00000073595 GO:0006351 biological_process transcription, DNA-templated
ENSDARP00000073595 GO:0006355 biological_process regulation of transcription, DNA-templated
ENSDARP00000073595 GO:0005634 cellular_component nucleus
ENSDARP00000073595 GO:0003677 molecular_function DNA binding
ENSDARP00000073595 GO:0046872 molecular_function metal ion binding

Orthologs
TAXID Organism Gene ID TAXID Organism Gene ID
10029 Cricetulus griseus 100763233 34638 Metaseiulus occidentalis 100905908
9597 Pan paniscus 100982711 9555 Papio anubis 101018078
9669 Mustela putorius furo 101681874 8083 Xiphophorus maculatus 102224181
7897 Latimeria chalumnae 102366596 7425 Nasonia vitripennis 100122469
9913 Bos taurus 100144618 7029 Acyrthosiphon pisum 100159049
28377 Anolis carolinensis 100567348 30195 Bombus terrestris 100652194
8128 Oreochromis niloticus 100707703 132113 Bombus impatiens 100745727
7463 Apis florea 100868688 143995 Megachile rotundata 100875911
9305 Sarcophilus harrisii 100934486 39432 Saimiri boliviensis 101030662
9685 Felis catus 101101354 59463 Myotis lucifugus 102442491
13735 Pelodiscus sinensis 102450368 7227 Drosophila melanogaster 38817
9598 Pan troglodytes 454169 7668 Strongylocentrotus purpuratus 593001
7070 Tribolium castaneum 662791 9646 Ailuropoda melanoleuca ENSAMEG00000017438
9358 Choloepus hoffmanni ENSCHOG00000010364 7719 Ciona intestinalis ENSCING00000006765
9483 Callithrix jacchus ENSCJAG00000016139 10141 Cavia porcellus ENSCPOG00000010698
9361 Dasypus novemcinctus ENSDNOG00000015712 9365 Erinaceus europaeus ENSEEUG00000011750
9371 Echinops telfairi ENSETEG00000017697 69293 Gasterosteus aculeatus ENSGACG00000015865
9031 Gallus gallus ENSGALG00000001817 9595 Gorilla gorilla ENSGGOG00000001063
9785 Loxodonta africana ENSLAFG00000007101 9315 Macropus eugenii ENSMEUG00000005728
30608 Microcebus murinus ENSMICG00000012128 9544 Macaca mulatta ENSMMUG00000009798
13616 Monodelphis domestica ENSMODG00000016490 61853 Nomascus leucogenys ENSNLEG00000004747
9258 Ornithorhynchus anatinus ENSOANG00000009260 9986 Oryctolagus cuniculus ENSOCUG00000008983
30611 Otolemur garnettii ENSOGAG00000011901 9978 Ochotona princeps ENSOPRG00000013470
8090 Oryzias latipes ENSORLG00000008771 9813 Procavia capensis ENSPCAG00000009389
7757 Petromyzon marinus ENSPMAG00000004257 42254 Sorex araneus ENSSARG00000006220
9823 Sus scrofa ENSSSCG00000021678 59729 Taeniopygia guttata ENSTGUG00000005603
99883 Tetraodon nigroviridis ENSTNIG00000009314 9478 Tarsius syrichta ENSTSYG00000007670
9739 Tursiops truncatus ENSTTRG00000009184 30538 Vicugna pacos ENSVPAG00000004409
9615 Canis familiaris ENSCAFG00000020355 10020 Dipodomys ordii ENSDORG00000000111
9796 Equus caballus ENSECAG00000015924 8049 Gadus morhua ENSGMOG00000006386
9103 Meleagris gallopavo ENSMGAG00000002200 132908 Pteropus vampyrus ENSPVAG00000016588
43179 Ictidomys tridecemlineatus ENSSTOG00000024951 37347 Tupaia belangeri ENSTBEG00000008701
31033 Takifugu rubripes ENSTRUG00000017943