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  • BIRCH: Comprehensive bioinfo. system - Support tickets

    Submit | Open tickets | Closed tickets

    [ Ticket #1216 ] PXHOM can't work with lowercase amino acids
    Date:
    04/22/17 18:59
    Submitted by:
    B_Fristensky
    Assigned to:
    B_Fristensky
    Category:
    Unset
    Priority:
    6
    Ticket group:
    Bug
    Resolution:
    Resolved
    Summary:
    PXHOM can't work with lowercase amino acids
    Original submission:
    Several possible places to fix this:
    *blprotein - PXHOM
    *hom.py
    *PXHOM

    The last is the cleanest and most effective fix, but requires revison of the Pascal code and recompiling for all platforms.
    Please log in to add comments and receive followups via email.
    Followups
    Comment Date By
    Short term fix: set readseq -C option to force amino acids to uppercase.

    The better long term fix is to modify P1HOM and P2HOM to accept lowercase.
    04/23/17 13:13 B_Fristensky
    No results for "Dependent on ticket"
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    No other tickets are dependent on this ticket
    Ticket change history
    Field Old value Date By
    status_id Open 04/23/17 13:13 B_Fristensky
    resolution_id Not Resolved 04/23/17 13:13 B_Fristensky
    close_date 12/31/69 19:00 04/23/17 13:13 B_Fristensky
    status_id Pending 04/22/17 19:00 B_Fristensky
    priority 5 04/22/17 19:00 B_Fristensky
    assigned_to unset 04/22/17 19:00 B_Fristensky
    resolution_id Unset 04/22/17 19:00 B_Fristensky

     

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