RESPONSIBILITIES

•  Design, implement, test and deploy analysis pipelines for handling of new sequencing technologies and techniques, and corresponding data with the eventual goal of integrating these with the institution's existing informatics infrastructure.
•  Gather requirements to develop software using a mix of the following: Java, Python or Perl/CGI, JavaScript, GIT, PL/SQL.
•  Build and develop web services to enable the continuing share and exchange of metadata between various software stacks.
•  Create and be in charge of service tickets pertaining to the pipelines.
•  Interact with peers to ensure efficient communication and completion of projects.
•  Apply analytical skills and creativity to solve diverse and challenging problems.

•  Work at a higher level of independence and responsibilities in carrying out assignments.
•  Will serve as a technical lead and key contributor called upon to troubleshoot and solve highly technical, complex problems.
•  Work closely with Systems Administration group to optimize hardware and configuration for maximal portal performance and stability.

REQUIREMENTS

•  Bachelor's degree in Computer Science, Engineering, Bioinformatics, or related field with a minimum of five years of work experience, or an equivalent combination of education and experience.
•  Demonstrated experience coding and debugging Java and object-oriented Perl.
•  Demonstrated experience in developing analysis pipelines.

•  High degree of comfort on un*x command line and navigating unix file system.
•  Ability to manage own development environment, modify web server and servlet configuration.
•  Good working knowledge of basic genomic concepts, data types, and data analysis methods, and their representation in software systems.
•  Ability to apply analytical skills and creativity to solve diverse and challenging problems.
•  Detail-oriented with ability to work effectively in both team and solo environment.
•  Good software development practices – self-documenting code, source control, bug tracking.

•  Experience managing genomic data

•  Bachelor's degree in Biology, Bioinformatics, Computer Science or related field with a minimum of seven years of work experience, or an equivalent combination of education and experience. Advanced degree (M.S./PhD preferred).
•  Extensive genomic analysis software experience and substantial knowledge of various bioinformatics algorithms related to sequence analysis.
•  Ability to troubleshoot complex software issues.

HOW TO APPLY

POLICY