Basic Information | |||
Gene ID | 6656 ; ![]() ![]() | ||
Gene Name | SOX1 | ||
Full Name | Transcription factor SOX-1 | ||
Organism | Homo sapiens [9606] |
Cross Reference | |||
UniProt | O00570 | UniGene | Hs.202526 |
PDB | NULL | OMIM | 602148 |
KEGG | hsa:6656 | UCSC | uc001vsb.1 |
Protein Interactions | |
DIP | NULL |
IntAct | O00570 |
MINT | NULL |
STRING | 9606.ENSP00000330218 |
Ensembl/RefSeq | Transcript ID | Protein ID | Gene ID |
ENSEMBL | |||
REFSEQ |
InterPro Annotation | |||||||
Protein | Program | Term | IPRS | Start | End | Score | Description |
ENSP00000330218 | Gene3D | G3DSA:1.10.30.10 | IPR009071 | 50 | 129 | 3.40e-40 | High mobility group box domain |
ENSP00000330218 | Pfam | PF00505 | IPR009071 | 51 | 119 | 2.80e-26 | High mobility group box domain |
ENSP00000330218 | Pfam | PF12336 | IPR022097 | 120 | 224 | 3.90e-13 | Transcription factor SOX |
ENSP00000330218 | ProSiteProfiles | PS50118 | IPR009071 | 51 | 119 | 0.00e-00 | High mobility group box domain |
ENSP00000330218 | SMART | SM00398 | IPR009071 | 50 | 120 | 5.00e-30 | High mobility group box domain |
ENSP00000330218 | SUPERFAMILY | SSF47095 | IPR009071 | 43 | 123 | 0.00e-00 | High mobility group box domain |
Pfam Annotation | ||||
Protein | Pfam ID | E.value | Name | Description |
ENSP00000330218 | PF00505 | 1.8e-26 | HMG_box | HMG (high mobility group) box |
ENSP00000330218 | PF12336 | 2.8e-16 | SOXp | SOX transcription factor |
ENSP00000330218 | PF09011 | 6e-11 | HMG_box_2 | HMG-box domain |
Gene Ontology Annotation | |||
Protein | Entry | Name Space | Description |
ENSP00000330218 | GO:0006351 | biological_process | transcription, DNA-templated |
ENSP00000330218 | GO:0006355 | biological_process | regulation of transcription, DNA-templated |
ENSP00000330218 | GO:0005634 | cellular_component | nucleus |
ENSP00000330218 | GO:0003677 | molecular_function | DNA binding |
ENSP00000330218 | GO:0003700 | molecular_function | sequence-specific DNA binding transcription factor activity |
Orthologs | |||||
TAXID | Organism | Gene ID | TAXID | Organism | Gene ID |
9986 | Oryctolagus cuniculus | 100349813 | 8128 | Oreochromis niloticus | 100691128 |
8083 | Xiphophorus maculatus | 102225865 | 7897 | Latimeria chalumnae | 102353566 |
7955 | Danio rerio | 436756 | 9913 | Bos taurus | 618135 |
69293 | Gasterosteus aculeatus | ENSGACG00000002889 | 8364 | Xenopus tropicalis | ENSXETG00000001902 |
28377 | Anolis carolinensis | ENSACAG00000006346 | 9615 | Canis familiaris | ENSCAFG00000006137 |
9361 | Dasypus novemcinctus | ENSDNOG00000023758 | 8049 | Gadus morhua | ENSGMOG00000020606 |
9315 | Macropus eugenii | ENSMEUG00000016617 | 30611 | Otolemur garnettii | ENSOGAG00000034416 |
8090 | Oryzias latipes | ENSORLG00000012110 | 9601 | Pongo abelii | ENSPPYG00000005512 |
99883 | Tetraodon nigroviridis | ENSTNIG00000013867 |