Basic Information | |||
Gene ID | ENSXETG00000001902 | ||
Gene Name | sox1 | ||
Full Name | Transcription factor Sox-1 | ||
Organism | Xenopus tropicalis [8364] |
Cross Reference | |||
UniProt | F6YJE5 | UniGene | NULL |
PDB | NULL | OMIM | NULL |
KEGG | NULL | UCSC | NULL |
Protein Interactions | |
DIP | NULL |
IntAct | NULL |
MINT | NULL |
STRING | NULL |
Ensembl/RefSeq | Transcript ID | Protein ID | Gene ID |
ENSEMBL |
InterPro Annotation | |||||||
Protein | Program | Term | IPRS | Start | End | Score | Description |
ENSXETP00000004030 | Gene3D | G3DSA:1.10.30.10 | IPR009071 | 36 | 115 | 2.90e-40 | High mobility group box domain |
ENSXETP00000004030 | Pfam | PF00505 | IPR009071 | 37 | 105 | 2.40e-26 | High mobility group box domain |
ENSXETP00000004030 | Pfam | PF12336 | IPR022097 | 106 | 215 | 1.30e-10 | Transcription factor SOX |
ENSXETP00000004030 | ProSiteProfiles | PS50118 | IPR009071 | 37 | 105 | 0.00e-00 | High mobility group box domain |
ENSXETP00000004030 | SMART | SM00398 | IPR009071 | 36 | 106 | 5.00e-30 | High mobility group box domain |
ENSXETP00000004030 | SUPERFAMILY | SSF47095 | IPR009071 | 31 | 109 | 0.00e-00 | High mobility group box domain |
Pfam Annotation | ||||
Protein | Pfam ID | E.value | Name | Description |
ENSXETP00000004030 | PF00505 | 1.5e-26 | HMG_box | HMG (high mobility group) box |
ENSXETP00000004030 | PF12336 | 4.1e-12 | SOXp | SOX transcription factor |
ENSXETP00000004030 | PF09011 | 4.5e-11 | HMG_box_2 | HMG-box domain |
Gene Ontology Annotation | |||
Protein | Entry | Name Space | Description |
ENSXETP00000004030 | GO:0006351 | biological_process | transcription, DNA-templated |
ENSXETP00000004030 | GO:0006355 | biological_process | regulation of transcription, DNA-templated |
ENSXETP00000004030 | GO:0005634 | cellular_component | nucleus |
ENSXETP00000004030 | GO:0003677 | molecular_function | DNA binding |
ENSXETP00000004030 | GO:0003700 | molecular_function | sequence-specific DNA binding transcription factor activity |
Orthologs | |||||
TAXID | Organism | Gene ID | TAXID | Organism | Gene ID |
9986 | Oryctolagus cuniculus | 100349813 | 8128 | Oreochromis niloticus | 100691128 |
8083 | Xiphophorus maculatus | 102225865 | 7897 | Latimeria chalumnae | 102353566 |
7955 | Danio rerio | 436756 | 9913 | Bos taurus | 618135 |
9606 | Homo sapiens | 6656 | 28377 | Anolis carolinensis | ENSACAG00000006346 |
9615 | Canis familiaris | ENSCAFG00000006137 | 9361 | Dasypus novemcinctus | ENSDNOG00000023758 |
69293 | Gasterosteus aculeatus | ENSGACG00000002889 | 8049 | Gadus morhua | ENSGMOG00000020606 |
9315 | Macropus eugenii | ENSMEUG00000016617 | 30611 | Otolemur garnettii | ENSOGAG00000034416 |
8090 | Oryzias latipes | ENSORLG00000012110 | 9601 | Pongo abelii | ENSPPYG00000005512 |
99883 | Tetraodon nigroviridis | ENSTNIG00000013867 |