charite.christo.protein
Class ChJmolPROXY

java.lang.Object
  charite.christo.AbstractProxy
      charite.christo.protein.AbstractProteinViewerProxy
          charite.christo.protein.ChJmolPROXY

All Implemented Interfaces:

ChRunnable, CommandInterpreter, Disposable, HasPropertyMap, HasProtein, ProteinViewer

public class ChJmolPROXY
extends AbstractProteinViewerProxy
implements ProteinViewer

HELP Home: http://jmol.sourceforge.net/
License: WIKI:LGPL
The protein structure viewer WIKI:Jmol is written in Java and understands Rasmol-instructions.

Field Summary

Fields inherited from class charite.christo.AbstractProxy

ACTIVATION, ADAPTERS_JAR, BIOJAVA_3D, COMMONS_COLLECTIONS, GLUGEN, JCOMMON, JOGL, LOG4J, PFX_INSTALLED, TRY_BOOT_CLASSLOADER

Fields inherited from interface charite.christo.protein.ProteinViewer

COMMAND_HIDE_EVERYTHING, COMMANDbackground, COMMANDbiomolecule, COMMANDcartoon, COMMANDcenter, COMMANDcenter_amino, COMMANDchange_object_color, COMMANDcolor, COMMANDdots, COMMANDhighlight_selected_amino_acids, COMMANDhighlight_selected_atoms, COMMANDlabel, COMMANDlabel_color, COMMANDlines, COMMANDmesh, COMMANDobject_delete, COMMANDribbons, COMMANDrotate, COMMANDsa_surface, COMMANDselect, COMMANDselection_name, COMMANDset_rotation_translation, COMMANDshowScriptPanel, COMMANDspheres, COMMANDsticks, COMMANDsurface, COMMANDsurface_color, COMMANDzoom, GET_ATOM_SELECTION_EXAMPLE, GET_AWTMASK_CONT_SELECTION, GET_AWTMASK_DISC_SELECTION, GET_CANVAS, GET_FLAGS, GET_FRAME_TITLE, GET_JMENUBAR, GET_LAST_CREATED_OBJECT, GET_SUPPORTED_COMMANDS, GET_SURFACEOBJECTS, INTERNAL_USE, INTERPRET_NO_MSG_DIALOGS, mapViewer, NONE, PFX_SURFACE_OBJECT, PROPERTY_EXTERNAL_PROCESS, PROPERTY_HAS_CONTEXTMENU, PROPERTY_HAS_SCRIPT_PANEL, PROPERTY_HEAVY_WEIGHT, PROPERTY_MULTI_MOLECULE, PROPERTY_MULTI_VIEW, PROPERTY_NAMED_SELECTIONS, PROPERTY_NEEDS_UPDATE_SURFACES_WHEN_ROTATED, PROPERTY_OPENGL, PROPERTY_RIBBON_COLOR_NO_CHANGE, PROPERTY_SEQUENCE_CURSOR_DELAYED, PROPERTY_TK, PROTEIN, RESIDUES, SELECTION_CURSOR, SELECTION_PICKED, SET_PROTEIN_VERBOSE, SET_RUN_AFTER_INSTALLATION, SHOW_CURSOR_IF_OTHER_PROTEIN, STYLE_COMMANDS

Fields inherited from interface charite.christo.ChRunnable

APPEND, COLUMN_TITLE, DOWNLOAD_FINISHED, GET_PANEL, ICON, INTERPRET_LINE, IS_DRAG4XY, ITEM_TEXT, MODIFY_RENDERER_COMPONENT, PROGRESS, REPAINT_CURSOR, SAY_DOWNLOADING, SET_ICON_IMAGE, SET_TREE_VALUE, SHOW_IN_FRAME, TAB_TEXT, TIP_TEXT

Constructor Summary

ChJmolPROXY()

Method Summary

static java.lang.String	getCustomizableExamples()
static java.lang.String	getCustomizableInitCommands()
java.lang.String	getRequiredJars()

Methods inherited from class charite.christo.protein.AbstractProteinViewerProxy

dispose, getProperty, getProtein, getViewersSharingViewV, handleEvent, pv, run, setProperty, setProtein, toString

Methods inherited from class charite.christo.AbstractProxy

disposeProxy, getControlPanel, getPrgParas, getPropertyMap, getProxy, getScore, getSharedControlPanel, getSharedInstance, interpret, jarFile, jarsContainingNativeLibraries, proxyObject, proxyObjectRun, remoteURLs, setOptions, setSharedInstance, usrShareJava

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface charite.christo.protein.ProteinViewer

getProperty, getViewersSharingViewV, setProperty, setProtein

Methods inherited from interface charite.christo.Disposable

dispose

Methods inherited from interface charite.christo.protein.HasProtein

getProtein

Methods inherited from interface charite.christo.CommandInterpreter

interpret

Constructor Detail

ChJmolPROXY

public ChJmolPROXY()

Method Detail

getRequiredJars

public java.lang.String getRequiredJars()

Specified by:

getRequiredJars in class AbstractProxy

getCustomizableInitCommands

public static java.lang.String getCustomizableInitCommands()

getCustomizableExamples

public static java.lang.String getCustomizableExamples()