charite.christo.protein
Class AbstractProteinViewerProxy

java.lang.Object
  charite.christo.AbstractProxy
      charite.christo.protein.AbstractProteinViewerProxy

All Implemented Interfaces:

ChRunnable, CommandInterpreter, Disposable, HasPropertyMap, HasProtein, ProteinViewer

Direct Known Subclasses:

ChAstexPROXY, ChJmolPROXY

public abstract class AbstractProteinViewerProxy
extends AbstractProxy
implements ProteinViewer, ChRunnable

Field Summary

Fields inherited from class charite.christo.AbstractProxy

ACTIVATION, ADAPTERS_JAR, BIOJAVA_3D, COMMONS_COLLECTIONS, GLUGEN, JCOMMON, JOGL, LOG4J, PFX_INSTALLED, TRY_BOOT_CLASSLOADER

Fields inherited from interface charite.christo.protein.ProteinViewer

COMMAND_HIDE_EVERYTHING, COMMANDbackground, COMMANDbiomolecule, COMMANDcartoon, COMMANDcenter, COMMANDcenter_amino, COMMANDchange_object_color, COMMANDcolor, COMMANDdots, COMMANDhighlight_selected_amino_acids, COMMANDhighlight_selected_atoms, COMMANDlabel, COMMANDlabel_color, COMMANDlines, COMMANDmesh, COMMANDobject_delete, COMMANDribbons, COMMANDrotate, COMMANDsa_surface, COMMANDselect, COMMANDselection_name, COMMANDset_rotation_translation, COMMANDshowScriptPanel, COMMANDspheres, COMMANDsticks, COMMANDsurface, COMMANDsurface_color, COMMANDzoom, GET_ATOM_SELECTION_EXAMPLE, GET_AWTMASK_CONT_SELECTION, GET_AWTMASK_DISC_SELECTION, GET_CANVAS, GET_FLAGS, GET_FRAME_TITLE, GET_JMENUBAR, GET_LAST_CREATED_OBJECT, GET_SUPPORTED_COMMANDS, GET_SURFACEOBJECTS, INTERNAL_USE, INTERPRET_NO_MSG_DIALOGS, mapViewer, NONE, PFX_SURFACE_OBJECT, PROPERTY_EXTERNAL_PROCESS, PROPERTY_HAS_CONTEXTMENU, PROPERTY_HAS_SCRIPT_PANEL, PROPERTY_HEAVY_WEIGHT, PROPERTY_MULTI_MOLECULE, PROPERTY_MULTI_VIEW, PROPERTY_NAMED_SELECTIONS, PROPERTY_NEEDS_UPDATE_SURFACES_WHEN_ROTATED, PROPERTY_OPENGL, PROPERTY_RIBBON_COLOR_NO_CHANGE, PROPERTY_SEQUENCE_CURSOR_DELAYED, PROPERTY_TK, PROTEIN, RESIDUES, SELECTION_CURSOR, SELECTION_PICKED, SET_PROTEIN_VERBOSE, SET_RUN_AFTER_INSTALLATION, SHOW_CURSOR_IF_OTHER_PROTEIN, STYLE_COMMANDS

Fields inherited from interface charite.christo.ChRunnable

APPEND, COLUMN_TITLE, DOWNLOAD_FINISHED, GET_PANEL, ICON, INTERPRET_LINE, IS_DRAG4XY, ITEM_TEXT, MODIFY_RENDERER_COMPONENT, PROGRESS, REPAINT_CURSOR, SAY_DOWNLOADING, SET_ICON_IMAGE, SET_TREE_VALUE, SHOW_IN_FRAME, TAB_TEXT, TIP_TEXT

Constructor Summary

AbstractProteinViewerProxy()

Method Summary

void	dispose()
java.lang.Object	getProperty(java.lang.String id) The method may return null.
Protein	getProtein()
java.util.Collection<? extends ProteinViewer>	getViewersSharingViewV(boolean proxyObject) Each instance is connected with only one protein.
void	handleEvent(StrapEvent ev)
ProteinViewer	pv()
java.lang.Object	run(java.lang.String id, java.lang.Object arg)
void	setProperty(java.lang.String id, java.lang.Object value)
boolean	setProtein(long options, Protein p, ProteinViewer inSameView) The only use of the setProtein and getProtein methods are to to keep a reference to the protein object.
java.lang.String	toString()

Methods inherited from class charite.christo.AbstractProxy

disposeProxy, getControlPanel, getPrgParas, getPropertyMap, getProxy, getRequiredJars, getScore, getSharedControlPanel, getSharedInstance, interpret, jarFile, jarsContainingNativeLibraries, proxyObject, proxyObjectRun, remoteURLs, setOptions, setSharedInstance, usrShareJava

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface charite.christo.CommandInterpreter

interpret

Constructor Detail

AbstractProteinViewerProxy

public AbstractProteinViewerProxy()

Method Detail

pv

public ProteinViewer pv()

getProtein

public Protein getProtein()

Specified by:

getProtein in interface HasProtein

setProtein

public boolean setProtein(long options,
                          Protein p,
                          ProteinViewer inSameView)

Description copied from interface: ProteinViewer

The only use of the setProtein and getProtein methods are to to keep a reference to the protein object. Otherwise both methods are not important.

Specified by:

setProtein in interface ProteinViewer

handleEvent

public void handleEvent(StrapEvent ev)

setProperty

public void setProperty(java.lang.String id,
                        java.lang.Object value)

Specified by:

setProperty in interface ProteinViewer

getProperty

public java.lang.Object getProperty(java.lang.String id)

Description copied from interface: ProteinViewer

The method may return null. GET_JMENUBAR: javax.swing.JMenuBar GET_CANVAS: java.awt.Component GET_SURFACEOBJECTS: List GET_FLAGS: long-bit-mask with properties A generic command like COMMANDcolor: Boolean.TRUE if command is supported

Specified by:

getProperty in interface ProteinViewer

run

public java.lang.Object run(java.lang.String id,
                            java.lang.Object arg)

Specified by:

run in interface ChRunnable

dispose

public void dispose()

Specified by:

dispose in interface Disposable

Overrides:

dispose in class AbstractProxy

getViewersSharingViewV

public java.util.Collection<? extends ProteinViewer> getViewersSharingViewV(boolean proxyObject)

Description copied from interface: ProteinViewer

Each instance is connected with only one protein. But several instances can share the view such that several proteins are displayed in the same panel.

Specified by:

getViewersSharingViewV in interface ProteinViewer

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object