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PGEToolbox is a MATLAB-based program for analysis of polymorphism and divergence data in population genetics and evolution. It computes basic statistics of DNA sequence variation and carries out neutrality tests, such as Tajima's D test, Fu & Li's tests and Fay & Wu's H test. The significance of tests is determined from the distribution of the statistics obtained by coalescent simulation. The toolbox performs McDonald-Kreitman test (and several extensions), and also contains functions for handling SNP genotype and haplotype data. The latest version of the program can be obtained from: http://bioinformatics.org/pgetoolbox/
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Discussion forums: Software: PGEToolbox: MATLAB toolbox for population genetics & evolution
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