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  • [Photo] Fiona Brinkman • March 28, 2002
    Bioinformaticist/Database Developer

    Do you want to lead the development of a truly novel genome database, involving over 60 researchers in 11 countries?

    The Brinkman Laboratory at Simon Fraser University (Greater Vancouver, B.C., Canada; http://www.pathogenomics.bc.ca/brinkman/) has an opening for a full-time Bioinformaticist/Database Developer, to expand the capabilities of the Pseudomonas Genome Database (http://www.pseudomonas.com). This researcher would be responsible for leading efforts to expand database flexibility in new ways, coordinate the input of a worldwide community of researchers, and add additional knowledge data to the database. In addition, some software development for the bPSORT project (improving computational prediction of subcellular localization of bacterial proteins), may be undertaken. Note that we are committed to furthering open source development.

    Experience with database and web-interface development is required and excellent knowledge of both Linux and Windows environments is necessary. Minimum requirements: B.Sc. or M.Sc. in computer science and at least second-year undergraduate molecular biology knowledge (or equivalent), plus evidence of experience working in a bioinformatics setting. Applicants with an M.Sc. or Ph.D. in a molecular biology, microbiology or related field, who have extensive computational experience and bioinformatics experience, will also be considered. Salary is competitive (up to $80,000, commensurate with experience). Experience with Javascript, VBScript, and ASP is desirable and familiarity with Perl, PHP, MySQL, or PostgreSQL would be a definite asset.

    This position is initially for two years (start date May to Sept. 2002), with the possibility of further renewal. Contact Dr. Fiona Brinkman at (604) 291-5646 for more information and forward a copy of your C.V./resume, start date(s) you'd prefer, unofficial copy of transcripts (to evaluate courses taken) and contact information for three references, to:

    brinkman[at]sfu.ca

    Please quote "position BDD2002-6" in the subject line of your email. We thank all applicants and regret that only those selected for an interview may be contacted further.

Discussion forums: Bioinformaticist/Database Developer (Greater Vancouver, Canada)

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Submitted by Nobody ; posted on Tuesday, June 3, 2003
Nancy Liao 6536 Randolph Ave. Burnaby, B.C. V5H 3W4 Tel: (604) 763-2451 E-mail: nancyliao33@hotmail.com CAREER OBJECTIVE To pursue a career as a computational biologist or bioinformatician BACKGROUND SUMMARY · 2-year experience in analyzing and data mining DNA, SAGE and EST data · 2-year experience in processing and developing database for biological data · 2-year experience in pattern extracting, clustering and classification on biological data · 3-year programming experience using C++, Visual Basic and object-oriented, 3-tier enterprise application design and programming · 2-year experience in using SQL, MySQL and database programming (ODBC, JDBC, ADO and mysql-jconnetor) · 1-year experience in JAVA programming (JDBC, JSP, Servlet) · 1-year experience in web application development (ASP, Vbscript, Javascript, DHTML, CSS, XML) WORK EXPERIENCE 2001 Sep-2002 Jan Computational biologist and bioinformatician, Helios Bioinformatics, Vancouver, BC · Designed the databases to store the EST data for data mining · Implemented a few clustering algorithms to group genes with similar expression patterns · Designed and implemented user interface to visualize the output 2000 Jan-2001 Aug Computational biologist and software engineer, Intelligent Database Lab, Simon Fraser University · Designed a good algorithm to get repeat patterns from DNA sequences · Implemented the DNA-Miner system, which can find repeat patterns in DNA sequences · Did some joined work on gene classification 1999 Jan-1999 April Software developer, Surrey Metro Saving, Surrey, BC · Database design and modeling, developing Entity-Relationship model · Used Visual Basic and ODBC to maintain and optimize the existing software for banking. COMPUTER SKILLS · Operating Systems: UNIX, Windows and Mac. · Languages: Java, C, C++, Visual Basic, HTML, DHTML, XML, ASP and JSP · Databases: SQL, MySQL and Sybase OTHER SKILLS · Working experience in bioinformatics and biology area · Strong academic background in data mining and pattern extracting · Strong written, verbal communication skills · Can work well independently as well as in a team environment EDUCATION · M.Sc., School of Computing Science, Simon Fraser University, Canada · B.Sc., Biology department, Wuhan University, China REWARDS · 2001 Opus Building Corporation Graduate Scholarship in Expert Systems · 1992 Outstanding Student Fellowship · 1991 University dancing contest (Ranked 1st) PUBLICATIONS · J. Han, H. Jamil, Y. Lu, L.Chen, Y. Liao, J.Pei: DNA-Miner: A system Prototype for Mining DNA sequence. SIGMOD 2001 EXTRACURRICULAR ACTIVITIES Reading, Dancing, Swimming, Tennis, Painting, Traveling References available upon request

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Submitted by Nobody ; posted on Saturday, May 31, 2003
CURRICULUM VITAE OBJECTIVES: To secure a managerial and designer position where I can use my technical skills to contribute in the Growth of the bioinformatics company and my career & achieve a Professional growth. MAJOR STRENGTHS: Working in a team, ability to work under stress, Confident Persuasive, good negotiation, energetic, Hard-working, good communicative and interpersonal Skills. SOFTWARE EXPERTISE : 1. Operating Systems : Windows, Ms-Dos and Linux 2. Languages Known : C, OOPS with C++, java, visual Basic, Bio-Perl 3. Database Management : Oracle 8i 4. Web designing : HTML, DHTML, ASP BIOSOFTWARES : Vector NTI 5.0,EMBOSS, Expression BIOSOFTWARES & DESIGNING BIOTOOLS : BLAST & FASTA, NCBI Tools BIOSTATISTICS, MATHEMATICS & COMPUTATIONAL ALGORITHM : BLAST algorithm including dynamic Programming BIOINFORMATICS TOOLS & TECHNIQUES : GENSCAN, BLAST, FASTA, Clustal W, PHYLIP, STRIDE, RasMol, 3Dee, Verify-3D, J-Pred, MAGPIE, Pip Maker, ExPASy Tools. CHEMINFORMATICS & DRUG DISCOVERY : Drug data base, QSAR & DOCKING ACADEMICS: 1) BIOINFORMATICS : Advanced Diploma in BioInformatics from STG International ltd., Bangalore. 2) ENGINEERING: B.E (computer science),V.T.U, P.E.S.C.E , mandya 1998-2003, (completing in june-july,2003) 65% 3) PUC : Pre-university govt college,mandya (science) 75% 4) SSLC : Kalegowda high school,mandya 79% PROJECTS UNDERTAKEN: Software for view a protein structure -8th semester, Duration: 6 Months - Taking a input as a PDB file and developing 3D structure of a protein using C language Summary: The project was done by 4 members . The project was done at STG International ltd., Bangalore. It is going to convert the coordinate file of a protein data bank into 3D view and help in drug designing Language Interface Online banking system & image processing -6th semester, Duration: 4-5 Months -Implemented on WINDOWS OS using ORACLE and VB Summary: Two members did the project and it is providing online banking system using VB as a front end and oracle as a back end. The project was done in college. Summary: Implementing edge detection algorithum using c language PERSONAL SUMMARY Name: hemantha Kumar k.v Address: #281,halhalli extension mandya Phone (Res): 08232-221578 Mobile: Email Id: hemanth_kvbio@yahoo.com Date Of Birth: 30th OCT1980 Gender: Male Marital Status: Unmarried Nationality: Indian Languages Known: Read, Write & Speak: English, Kannada, Hindi Hobbies: Basketball, football, hockey, cricket Project under progress: Software for predicting the membrane protein: Summary: Predicting the membrane protein from a protein sequence and give maximum accuracy in predicting. This project is taken from NCBS(national center for biological science,bangalore) by individual and iam implementing in C++ language. Hemantha kumar k.v s/o dr|| venkatesha #281,halhalli extension Mandya-571401 Ph:08232-221578 hemanth_kvbio@yahoo.com
resume
Submitted by Nobody ; posted on Tuesday, June 3, 2003
Nancy Liao 6536 Randolph Ave. Burnaby, B.C. V5H 3W4 Tel: (604) 763-2451 E-mail: nancyliao33@hotmail.com CAREER OBJECTIVE To pursue a career as a computational biologist or bioinformatician BACKGROUND SUMMARY · 2-year experience in analyzing and data mining DNA, SAGE and EST data · 2-year experience in processing and developing database for biological data · 2-year experience in pattern extracting, clustering and classification on biological data · 3-year programming experience using C++, Visual Basic and object-oriented, 3-tier enterprise application design and programming · 2-year experience in using SQL, MySQL and database programming (ODBC, JDBC, ADO and mysql-jconnetor) · 1-year experience in JAVA programming (JDBC, JSP, Servlet) · 1-year experience in web application development (ASP, Vbscript, Javascript, DHTML, CSS, XML) WORK EXPERIENCE 2001 Sep-2002 Jan Computational biologist and bioinformatician, Helios Bioinformatics, Vancouver, BC · Designed the databases to store the EST data for data mining · Implemented a few clustering algorithms to group genes with similar expression patterns · Designed and implemented user interface to visualize the output 2000 Jan-2001 Aug Computational biologist and software engineer, Intelligent Database Lab, Simon Fraser University · Designed a good algorithm to get repeat patterns from DNA sequences · Implemented the DNA-Miner system, which can find repeat patterns in DNA sequences · Did some joined work on gene classification 1999 Jan-1999 April Software developer, Surrey Metro Saving, Surrey, BC · Database design and modeling, developing Entity-Relationship model · Used Visual Basic and ODBC to maintain and optimize the existing software for banking. COMPUTER SKILLS · Operating Systems: UNIX, Windows and Mac. · Languages: Java, C, C++, Visual Basic, HTML, DHTML, XML, ASP and JSP · Databases: SQL, MySQL and Sybase OTHER SKILLS · Working experience in bioinformatics and biology area · Strong academic background in data mining and pattern extracting · Strong written, verbal communication skills · Can work well independently as well as in a team environment EDUCATION · M.Sc., School of Computing Science, Simon Fraser University, Canada · B.Sc., Biology department, Wuhan University, China REWARDS · 2001 Opus Building Corporation Graduate Scholarship in Expert Systems · 1992 Outstanding Student Fellowship · 1991 University dancing contest (Ranked 1st) PUBLICATIONS · J. Han, H. Jamil, Y. Lu, L.Chen, Y. Liao, J.Pei: DNA-Miner: A system Prototype for Mining DNA sequence. SIGMOD 2001 EXTRACURRICULAR ACTIVITIES Reading, Dancing, Swimming, Tennis, Painting, Traveling References available upon request

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