[Next-Generation Sequencing Book]
Software: inGAP: New software for analyzing next-gen genomic data
Submitted by fq; posted on Monday, June 8, 2009 (1 comment)
inGAP (Integrated Next-gen Genome Analysis Platform) is an integrated platform for next-generation sequencing projects, the core function of which is to detect SNPs and indels using a Bayesian algorithm.

FEATURES

  • No read length restriction
  • Can detect most small indels in either single-end or paired-end data sets
  • Has a strong capability to identify variants based on a relatively divergent reference genome
  • Provides a user-friendly graphic interface
  • Can be used to detect intraspecific polymorphisms (including SNPs and indels) based on a pairwise comparison of multiple whole genomes
  • Employs a global heuristic searching approach to layout contigs based on one or more reference genomes
  • Also provides a handful of bioinformatic tools for read simulation, mutation incorporation, format conversion, etc.

FOR MORE INFORMATION

Please refer to the following link for detail: http://sites.google.com/site/nextgengenomics/ingap
Discussion forums: Software: inGAP: New software for analyzing next-gen genomic data

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This tool is being discussed on the SeqAnswers forum
Submitted by Dan Bolser; posted on Saturday, July 4, 2009
You can join the discussion here: http://seqanswers.com/forums/showthread.php?t=1885



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This tool is being discussed on the SeqAnswers forum
Submitted by Dan Bolser; posted on Saturday, July 4, 2009
You can join the discussion here: http://seqanswers.com/forums/showthread.php?t=1885

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