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Dr. Leonid Zaslavsky
[Send a message] Member since: November 02, 2004
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At NIH/NCBI, I develop software for clustering, exploratory data analysis and visualization tools for bacterial genomics and proteomics, pan-genome analysis, comparative genomics of bacterial proteomes including pathogens. I also worked on exploratory data analysis and visualization tools used in NCBI Influenza Virus Resource and NCBI Virus Variation Resources.
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Curriculum vitae
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Current address:
National Center for Biotechnology Information
National Institutes of Health
Bethesda,
Maryland
United States
Education:
Ph.D. in computational modeling
Russian Academy of Sciences
1989 -
1993
Postdoctoral Researcher
Howard Hughes Medical Institute, NYU
1996 -
1997
Postdoctoral Researcher
The Weizmann Institute of Science
1993 -
1996
Experience:
Staff Scientist
National Center for Biotechnology Information, National Institutes of Health
Skills:
Algorithms
Parallel Computing
C++
SQL
Perl, JavaScript
Activities:
ACM Senior Member Award, 2011
Sir Charles Chlore Postdoctoral Fellowship, 1993-1996
Interests:
Protein clustering
Parallel algorithms
Bacterial genomics - algorithms
Genomics of Viruses - algorithms
Visualization of bioinformatics data
References:
Zaslavsky, L. et al. Bacterial pan-genomes: data representation and analysis. ACM BCB 2013, Washington, DC, September 22-25, 2013
Zaslavsky, L. et al. A framework for pan-genome analysis and visualization. VIZBI 2012, Heidelberg, Germany, March 5-8, 2012
Zaslavsky, L. et al. Visualization of large influenza virus sequence datasets using adaptively aggregated trees with sampling-based subscale representation. BMC Bioinformatics 2008, 9:237.
Resch, W. et al. Virus variation resources at the National Center for Biotechnology Information: dengue virus. BMC Microbiol. 2009; 9: 65.
Bao, Y. et al. The Influenza Virus Resource at the National Center for Biotechnology Information, J. Virol., Vol. 82, Issue 2, 596-601, 2008
Other:
Multiresolution Representations of Biological Sequence Datasets.Phylogenetics: New data, new Phylogenetic challenges. Isaac Newton Institute for Mathematical Sciences, June 20-24, 2011
Zaslavsky, L. et al. An Adaptive Resolution Visualization of Large Influenza Virus Sequence Datasets. Lecture Notes in Computer Science, 4463, Springer, 2007. pp. 192-202.
Zaslavsky, L. et al. Tatusova, Tatiana. Mining the NCBI Influenza Sequence Database: adaptive grouping of BLAST results using precalculated neighbor indexing. PLoS Currents Influenza. 2009 Nov 2:RRN1124.
Zaslavsky, L. et al. Accelerating the Neighbor-Joining Algorithm Using the Adaptive Bucket Data Structure. Lecture Notes in Computer Science, 4983, Springer, 2008. pp. 122-133.
Zaslavsky, L et al. Multiresolution approaches to representation and visualization of large influenza virus sequence datasets. Proc. of IEEE Inernational Conference on Bioinformatics and Biomedicine Workshops, 2007. BIBM 2007. IEEE, 2007, pp. 109-114.
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