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Analysis context download

TestOnReactome 0.1

Simple analysis context.

It includes:

  • A link to one single pathway in Reactome (must be online or edit the ontology list)

  • A pre-processing rule that asserts rdfs:label from bioPAX:SHORT-NAME (for biopax-level2)

  • A "sort of" inference rule that asserts that two elements participate in the same component if they are part of the same component (this is really a proof of concept... more sophistacted reasoning later...)

  • A simple visual query (pattern) that corresponds to "all the elements of type protein"
  • Generic configurations for namespaces

Note that rules are defined for biopax-level2. This is just a demo context. More coming...

donwload it here