Basic Information
Gene ID 323473
Gene Name prdm1a; prdm1
Full Name PR domain containing 1a, with ZNF domain
Organism Danio rerio [7955]

Cross Reference
UniProt Q68EH4 UniGene Dr.77773
PDB NULL OMIM NULL
KEGG dre:323473 UCSC NULL

Protein Interactions
DIP NULL
IntAct NULL
MINT NULL
STRING NULL

Ensembl/RefSeq
Transcript ID
Protein ID
Gene ID
ENSEMBL
REFSEQ

InterPro Annotation
Protein Program Term IPRS Start End Score Description
ENSDARP00000004889 Gene3D G3DSA:3.30.160.60 IPR013087 522 551 2.80e-14 Zinc finger C2H2-type/integrase DNA-binding domain
ENSDARP00000004889 Gene3D G3DSA:3.30.160.60 IPR013087 552 571 5.30e-13 Zinc finger C2H2-type/integrase DNA-binding domain
ENSDARP00000004889 Gene3D G3DSA:3.30.160.60 IPR013087 572 597 3.30e-16 Zinc finger C2H2-type/integrase DNA-binding domain
ENSDARP00000004889 Gene3D G3DSA:3.30.160.60 IPR013087 598 625 5.20e-11 Zinc finger C2H2-type/integrase DNA-binding domain
ENSDARP00000004889 Gene3D G3DSA:3.30.160.60 IPR013087 626 654 2.80e-05 Zinc finger C2H2-type/integrase DNA-binding domain
ENSDARP00000004889 Pfam PF00856 IPR001214 95 195 6.60e-06 SET domain
ENSDARP00000004889 PIRSF PIRSF013212 IPR016608 1 776 0.00e-00 PR-domain zinc finger protein PRDM1
ENSDARP00000004889 ProSitePatterns PS00028 IPR007087 524 544 - Zinc finger, C2H2
ENSDARP00000004889 ProSitePatterns PS00028 IPR007087 552 572 - Zinc finger, C2H2
ENSDARP00000004889 ProSitePatterns PS00028 IPR007087 580 600 - Zinc finger, C2H2
ENSDARP00000004889 ProSitePatterns PS00028 IPR007087 608 628 - Zinc finger, C2H2
ENSDARP00000004889 ProSiteProfiles PS50157 IPR007087 522 549 0.00e-00 Zinc finger, C2H2
ENSDARP00000004889 ProSiteProfiles PS50157 IPR007087 550 577 0.00e-00 Zinc finger, C2H2
ENSDARP00000004889 ProSiteProfiles PS50157 IPR007087 578 605 0.00e-00 Zinc finger, C2H2
ENSDARP00000004889 ProSiteProfiles PS50157 IPR007087 606 633 0.00e-00 Zinc finger, C2H2
ENSDARP00000004889 ProSiteProfiles PS50280 IPR001214 79 196 0.00e-00 SET domain
ENSDARP00000004889 SMART SM00317 IPR001214 79 202 3.40e-17 SET domain
ENSDARP00000004889 SMART SM00355 IPR015880 522 544 1.20e-06 Zinc finger, C2H2-like
ENSDARP00000004889 SMART SM00355 IPR015880 550 572 1.30e-05 Zinc finger, C2H2-like
ENSDARP00000004889 SMART SM00355 IPR015880 578 600 2.50e-05 Zinc finger, C2H2-like
ENSDARP00000004889 SMART SM00355 IPR015880 606 628 3.70e-05 Zinc finger, C2H2-like
ENSDARP00000004889 SMART SM00355 IPR015880 634 654 6.00e-01 Zinc finger, C2H2-like

Pfam Annotation
Protein Pfam ID E.value Name Description
ENSDARP00000004889 PF13465 1.4e-26 zf-H2C2_2 Zinc-finger double domain
ENSDARP00000004889 PF00096 2.1e-16 zf-C2H2 Zinc finger, C2H2 type
ENSDARP00000004889 PF13894 1.3e-14 zf-C2H2_4 C2H2-type zinc finger
ENSDARP00000004889 PF00856 1.7e-06 SET SET domain
ENSDARP00000004889 PF13912 0.0002 zf-C2H2_6 C2H2-type zinc finger

Gene Ontology Annotation
Protein Entry Name Space Description
ENSDARP00000004889 GO:0006351 biological_process transcription, DNA-templated
ENSDARP00000004889 GO:0005634 cellular_component nucleus
ENSDARP00000004889 GO:0003677 molecular_function DNA binding
ENSDARP00000004889 GO:0003700 molecular_function sequence-specific DNA binding transcription factor activity
ENSDARP00000004889 GO:0046872 molecular_function metal ion binding

Orthologs
TAXID Organism Gene ID TAXID Organism Gene ID
9796 Equus caballus 100071967 7070 Tribolium castaneum 100142159
9823 Sus scrofa 100154284 7029 Acyrthosiphon pisum 100159482
61853 Nomascus leucogenys 100585120 8128 Oreochromis niloticus 100706221
143995 Megachile rotundata 100877382 34638 Metaseiulus occidentalis 100906146
30611 Otolemur garnettii 100943698 9597 Pan paniscus 100979416
9555 Papio anubis 101009742 39432 Saimiri boliviensis 101033194
9595 Gorilla gorilla 101142019 9669 Mustela putorius furo 101675818
43179 Ictidomys tridecemlineatus 101977297 13735 Pelodiscus sinensis 102454613
10090 Mus musculus 12142 7425 Nasonia vitripennis 100123469
9601 Pongo abelii 100452654 30195 Bombus terrestris 100650488
132113 Bombus impatiens 100741638 10029 Cricetulus griseus 100759446
10116 Rattus norvegicus 309871 9031 Gallus gallus 445340
9606 Homo sapiens 639 28377 Anolis carolinensis ENSACAG00000005496
9646 Ailuropoda melanoleuca ENSAMEG00000001482 10020 Dipodomys ordii ENSDORG00000014237
9371 Echinops telfairi ENSETEG00000019669 9785 Loxodonta africana ENSLAFG00000013436
30608 Microcebus murinus ENSMICG00000010329 9258 Ornithorhynchus anatinus ENSOANG00000004176
9986 Oryctolagus cuniculus ENSOCUG00000016978 9978 Ochotona princeps ENSOPRG00000006055
9813 Procavia capensis ENSPCAG00000009179 132908 Pteropus vampyrus ENSPVAG00000011732
42254 Sorex araneus ENSSARG00000004079 9478 Tarsius syrichta ENSTSYG00000011666
30538 Vicugna pacos ENSVPAG00000011363 8364 Xenopus tropicalis ENSXETG00000008674
8083 Xiphophorus maculatus ENSXMAG00000013351 7227 Drosophila melanogaster 38638
7460 Apis mellifera 408295 9615 Canis familiaris 481947
7668 Strongylocentrotus purpuratus 751833 9913 Bos taurus ENSBTAG00000009631
9358 Choloepus hoffmanni ENSCHOG00000011220 9483 Callithrix jacchus ENSCJAG00000009793
10141 Cavia porcellus ENSCPOG00000014064 51511 Ciona savignyi ENSCSAVG00000011146
9365 Erinaceus europaeus ENSEEUG00000013222 9685 Felis catus ENSFCAG00000010755
69293 Gasterosteus aculeatus ENSGACG00000001740 8049 Gadus morhua ENSGMOG00000009730
9315 Macropus eugenii ENSMEUG00000000043 9103 Meleagris gallopavo ENSMGAG00000013524
59463 Myotis lucifugus ENSMLUG00000014085 9544 Macaca mulatta ENSMMUG00000003420
13616 Monodelphis domestica ENSMODG00000028134 8090 Oryzias latipes ENSORLG00000015684
7757 Petromyzon marinus ENSPMAG00000003606 9598 Pan troglodytes ENSPTRG00000000383
9305 Sarcophilus harrisii ENSSHAG00000010994 37347 Tupaia belangeri ENSTBEG00000004089
59729 Taeniopygia guttata ENSTGUG00000012204 99883 Tetraodon nigroviridis ENSTNIG00000003926
31033 Takifugu rubripes ENSTRUG00000000404 9739 Tursiops truncatus ENSTTRG00000012894