Basic Information | |||
Gene ID | 323473 | ||
Gene Name | prdm1a; prdm1 | ||
Full Name | PR domain containing 1a, with ZNF domain | ||
Organism | Danio rerio [7955] |
Cross Reference | |||
UniProt | Q68EH4 | UniGene | Dr.77773 |
PDB | NULL | OMIM | NULL |
KEGG | dre:323473 | UCSC | NULL |
Protein Interactions | |
DIP | NULL |
IntAct | NULL |
MINT | NULL |
STRING | NULL |
Ensembl/RefSeq | Transcript ID | Protein ID | Gene ID |
ENSEMBL | |||
REFSEQ |
InterPro Annotation | |||||||
Protein | Program | Term | IPRS | Start | End | Score | Description |
ENSDARP00000004889 | Gene3D | G3DSA:3.30.160.60 | IPR013087 | 522 | 551 | 2.80e-14 | Zinc finger C2H2-type/integrase DNA-binding domain |
ENSDARP00000004889 | Gene3D | G3DSA:3.30.160.60 | IPR013087 | 552 | 571 | 5.30e-13 | Zinc finger C2H2-type/integrase DNA-binding domain |
ENSDARP00000004889 | Gene3D | G3DSA:3.30.160.60 | IPR013087 | 572 | 597 | 3.30e-16 | Zinc finger C2H2-type/integrase DNA-binding domain |
ENSDARP00000004889 | Gene3D | G3DSA:3.30.160.60 | IPR013087 | 598 | 625 | 5.20e-11 | Zinc finger C2H2-type/integrase DNA-binding domain |
ENSDARP00000004889 | Gene3D | G3DSA:3.30.160.60 | IPR013087 | 626 | 654 | 2.80e-05 | Zinc finger C2H2-type/integrase DNA-binding domain |
ENSDARP00000004889 | Pfam | PF00856 | IPR001214 | 95 | 195 | 6.60e-06 | SET domain |
ENSDARP00000004889 | PIRSF | PIRSF013212 | IPR016608 | 1 | 776 | 0.00e-00 | PR-domain zinc finger protein PRDM1 |
ENSDARP00000004889 | ProSitePatterns | PS00028 | IPR007087 | 524 | 544 | - | Zinc finger, C2H2 |
ENSDARP00000004889 | ProSitePatterns | PS00028 | IPR007087 | 552 | 572 | - | Zinc finger, C2H2 |
ENSDARP00000004889 | ProSitePatterns | PS00028 | IPR007087 | 580 | 600 | - | Zinc finger, C2H2 |
ENSDARP00000004889 | ProSitePatterns | PS00028 | IPR007087 | 608 | 628 | - | Zinc finger, C2H2 |
ENSDARP00000004889 | ProSiteProfiles | PS50157 | IPR007087 | 522 | 549 | 0.00e-00 | Zinc finger, C2H2 |
ENSDARP00000004889 | ProSiteProfiles | PS50157 | IPR007087 | 550 | 577 | 0.00e-00 | Zinc finger, C2H2 |
ENSDARP00000004889 | ProSiteProfiles | PS50157 | IPR007087 | 578 | 605 | 0.00e-00 | Zinc finger, C2H2 |
ENSDARP00000004889 | ProSiteProfiles | PS50157 | IPR007087 | 606 | 633 | 0.00e-00 | Zinc finger, C2H2 |
ENSDARP00000004889 | ProSiteProfiles | PS50280 | IPR001214 | 79 | 196 | 0.00e-00 | SET domain |
ENSDARP00000004889 | SMART | SM00317 | IPR001214 | 79 | 202 | 3.40e-17 | SET domain |
ENSDARP00000004889 | SMART | SM00355 | IPR015880 | 522 | 544 | 1.20e-06 | Zinc finger, C2H2-like |
ENSDARP00000004889 | SMART | SM00355 | IPR015880 | 550 | 572 | 1.30e-05 | Zinc finger, C2H2-like |
ENSDARP00000004889 | SMART | SM00355 | IPR015880 | 578 | 600 | 2.50e-05 | Zinc finger, C2H2-like |
ENSDARP00000004889 | SMART | SM00355 | IPR015880 | 606 | 628 | 3.70e-05 | Zinc finger, C2H2-like |
ENSDARP00000004889 | SMART | SM00355 | IPR015880 | 634 | 654 | 6.00e-01 | Zinc finger, C2H2-like |
Pfam Annotation | ||||
Protein | Pfam ID | E.value | Name | Description |
ENSDARP00000004889 | PF13465 | 1.4e-26 | zf-H2C2_2 | Zinc-finger double domain |
ENSDARP00000004889 | PF00096 | 2.1e-16 | zf-C2H2 | Zinc finger, C2H2 type |
ENSDARP00000004889 | PF13894 | 1.3e-14 | zf-C2H2_4 | C2H2-type zinc finger |
ENSDARP00000004889 | PF00856 | 1.7e-06 | SET | SET domain |
ENSDARP00000004889 | PF13912 | 0.0002 | zf-C2H2_6 | C2H2-type zinc finger |
Gene Ontology Annotation | |||
Protein | Entry | Name Space | Description |
ENSDARP00000004889 | GO:0006351 | biological_process | transcription, DNA-templated |
ENSDARP00000004889 | GO:0005634 | cellular_component | nucleus |
ENSDARP00000004889 | GO:0003677 | molecular_function | DNA binding |
ENSDARP00000004889 | GO:0003700 | molecular_function | sequence-specific DNA binding transcription factor activity |
ENSDARP00000004889 | GO:0046872 | molecular_function | metal ion binding |
Orthologs | |||||
TAXID | Organism | Gene ID | TAXID | Organism | Gene ID |
9796 | Equus caballus | 100071967 | 7070 | Tribolium castaneum | 100142159 |
9823 | Sus scrofa | 100154284 | 7029 | Acyrthosiphon pisum | 100159482 |
61853 | Nomascus leucogenys | 100585120 | 8128 | Oreochromis niloticus | 100706221 |
143995 | Megachile rotundata | 100877382 | 34638 | Metaseiulus occidentalis | 100906146 |
30611 | Otolemur garnettii | 100943698 | 9597 | Pan paniscus | 100979416 |
9555 | Papio anubis | 101009742 | 39432 | Saimiri boliviensis | 101033194 |
9595 | Gorilla gorilla | 101142019 | 9669 | Mustela putorius furo | 101675818 |
43179 | Ictidomys tridecemlineatus | 101977297 | 13735 | Pelodiscus sinensis | 102454613 |
10090 | Mus musculus | 12142 | 7425 | Nasonia vitripennis | 100123469 |
9601 | Pongo abelii | 100452654 | 30195 | Bombus terrestris | 100650488 |
132113 | Bombus impatiens | 100741638 | 10029 | Cricetulus griseus | 100759446 |
10116 | Rattus norvegicus | 309871 | 9031 | Gallus gallus | 445340 |
9606 | Homo sapiens | 639 | 28377 | Anolis carolinensis | ENSACAG00000005496 |
9646 | Ailuropoda melanoleuca | ENSAMEG00000001482 | 10020 | Dipodomys ordii | ENSDORG00000014237 |
9371 | Echinops telfairi | ENSETEG00000019669 | 9785 | Loxodonta africana | ENSLAFG00000013436 |
30608 | Microcebus murinus | ENSMICG00000010329 | 9258 | Ornithorhynchus anatinus | ENSOANG00000004176 |
9986 | Oryctolagus cuniculus | ENSOCUG00000016978 | 9978 | Ochotona princeps | ENSOPRG00000006055 |
9813 | Procavia capensis | ENSPCAG00000009179 | 132908 | Pteropus vampyrus | ENSPVAG00000011732 |
42254 | Sorex araneus | ENSSARG00000004079 | 9478 | Tarsius syrichta | ENSTSYG00000011666 |
30538 | Vicugna pacos | ENSVPAG00000011363 | 8364 | Xenopus tropicalis | ENSXETG00000008674 |
8083 | Xiphophorus maculatus | ENSXMAG00000013351 | 7227 | Drosophila melanogaster | 38638 |
7460 | Apis mellifera | 408295 | 9615 | Canis familiaris | 481947 |
7668 | Strongylocentrotus purpuratus | 751833 | 9913 | Bos taurus | ENSBTAG00000009631 |
9358 | Choloepus hoffmanni | ENSCHOG00000011220 | 9483 | Callithrix jacchus | ENSCJAG00000009793 |
10141 | Cavia porcellus | ENSCPOG00000014064 | 51511 | Ciona savignyi | ENSCSAVG00000011146 |
9365 | Erinaceus europaeus | ENSEEUG00000013222 | 9685 | Felis catus | ENSFCAG00000010755 |
69293 | Gasterosteus aculeatus | ENSGACG00000001740 | 8049 | Gadus morhua | ENSGMOG00000009730 |
9315 | Macropus eugenii | ENSMEUG00000000043 | 9103 | Meleagris gallopavo | ENSMGAG00000013524 |
59463 | Myotis lucifugus | ENSMLUG00000014085 | 9544 | Macaca mulatta | ENSMMUG00000003420 |
13616 | Monodelphis domestica | ENSMODG00000028134 | 8090 | Oryzias latipes | ENSORLG00000015684 |
7757 | Petromyzon marinus | ENSPMAG00000003606 | 9598 | Pan troglodytes | ENSPTRG00000000383 |
9305 | Sarcophilus harrisii | ENSSHAG00000010994 | 37347 | Tupaia belangeri | ENSTBEG00000004089 |
59729 | Taeniopygia guttata | ENSTGUG00000012204 | 99883 | Tetraodon nigroviridis | ENSTNIG00000003926 |
31033 | Takifugu rubripes | ENSTRUG00000000404 | 9739 | Tursiops truncatus | ENSTTRG00000012894 |