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[ Ticket #177 ] Handling X character (mask) in sequences
Date:
02/07/04 08:31
Submitted by:
dmb
Assigned to:
liwz
Category:
Clustering
Priority:
9
Ticket group:
Serious
Resolution:
Unset
Summary:
Handling X character (mask) in sequences
Original submission:
CD-HIT treets x as if it were a valid amino acid, allowing spurious matches between low-complexity masked sequenecs for example.

For an example of this bug in action, see

http://www.bioinformatics.org/ftp/cd-hit/TEST_RESULTS/Aug-2003/X-character-test/
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Followups
Comment Date By
I reorganized again (sorry!), this time (finally?) you need to look here...

http://ftp.bioinformatics.org/pub/cd-hit/TEST_RESULTS/Truncated-Sequences-Test/

05/24/05 11:30 dmb
Sorry - I reorganized...

http://bioinformatics.org/ftp/cd-hit/Aug-2003/TEST_RESULTS/X-character-test/
02/09/04 20:27 dmb
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Ticket change history
Field Old value Date By
status_id Open 07/14/11 01:19 liwz
close_date 12/31/69 19:00 07/14/11 01:19 liwz
assigned_to vijaya_p5 05/24/05 11:15 dmb
status_id Unset 08/19/04 07:30 dmb
assigned_to unset 08/13/04 11:06 dmb
priority 5 02/09/04 20:31 dmb

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