Date:
02/07/04 08:31
|
Submitted by:
dmb
|
Assigned to:
liwz
|
Category:
Clustering
|
Priority:
9
|
Ticket group:
Serious
|
Resolution:
Unset
|
Summary:
Handling X character (mask) in sequences
|
Original submission:
CD-HIT treets x as if it were a valid amino acid, allowing spurious matches between low-complexity masked sequenecs for example.
For an example of this bug in action, see
http://www.bioinformatics.org/ftp/cd-hit/TEST_RESULTS/Aug-2003/X-character-test/
|
|
Please log in to add comments and receive followups via email.
|
|
Followups
|
Comment
|
Date
|
By
|
I reorganized again (sorry!), this time (finally?) you need to look here...
http://ftp.bioinformatics.org/pub/cd-hit/TEST_RESULTS/Truncated-Sequences-Test/
|
05/24/05 11:30
|
dmb
|
Sorry - I reorganized...
http://bioinformatics.org/ftp/cd-hit/Aug-2003/TEST_RESULTS/X-character-test/
|
02/09/04 20:27
|
dmb
|
|
|
No results for "Dependent on ticket" |
No results for "Dependent on Task" |
|
No other tickets are dependent on this ticket
|
|
Ticket change history
|
Field
|
Old value
|
Date
|
By
|
|
status_id
|
Open |
07/14/11 01:19
|
liwz
|
|
close_date
|
12/31/69 19:00 |
07/14/11 01:19
|
liwz
|
|
assigned_to
|
vijaya_p5 |
05/24/05 11:15
|
dmb
|
|
status_id
|
Unset |
08/19/04 07:30
|
dmb
|
|
assigned_to
|
unset |
08/13/04 11:06
|
dmb
|
|
priority
|
5 |
02/09/04 20:31
|
dmb
|
|
![[Next-Generation Sequencing Book]](https://www.bioinformatics.org/images/ack_banners/NGS-Book-1-728x90.png)