[Next-Generation Sequencing Book]

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[ Ticket #399 ]
Date:
08/02/07 08:35
Submitted by:
unset 		Assigned to:
unset
Category:
Clustering 		Priority:
5
Ticket group:
Serious 		Resolution:
Resolved
Summary:
Original submission:
I used cd-hit-est to remove redundancy. But I found when the threshold was set to 0.99, some sequences with 98% identity were also be clustered in some groups. This seemed not due to short word size (n=8), because longer word size (n=9) gave the same result.
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Ticket change history
Field Old value Date By
status_id Pending 05/16/11 00:34 liwz
resolution_id Unset 05/16/11 00:34 liwz
close_date 12/31/69 19:00 05/16/11 00:34 liwz

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