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[ Ticket #400 ] wrong identity in clustered group
Date:
08/06/07 19:35
Submitted by:
unset
Assigned to:
unset
Category:
Clustering
Priority:
5
Ticket group:
Serious
Resolution:
Unset
Summary:
wrong identity in clustered group
Original submission:
I used cd-hit-est to remove redundancy. But I found when the threshold was set to 0.99, some sequences with 98% identity were also be clustered in some groups. This seemed not due to short word size (n=8), because longer word size (n=9) gave the same result.
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Ticket change history
Field Old value Date By
status_id Pending 07/14/11 01:21 liwz
close_date 12/31/69 19:00 07/14/11 01:21 liwz

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